Link to H25P06.4RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y53H1B.6geneMap Link to Y53H1B.6RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to H25P06.4geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:H25P06.4 Ace View of JA:H25P06.4
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  H25P06.4
Description of "H25P06.4"  Associated GO Term : protein dimerization activity
KOG Annotation  Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily)
Tam3-transposase (Ac family)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (I:11308038..11309922)
Transcript overlap: 726 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 621
Relative score: 0.986 (Best raw score= for Gene )
Specificity index: 0.496
Wormbase (BLAST) RNAi primary
External "H25P06.4" Links  Wormbase NCBI
Gene Inhibited  Y53H1B.6
Description of "Y53H1B.6"  Associated GO Term : calpain activity
KOG Annotation  Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:11303397..11305281)
Transcript overlap: 756 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 630
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.504
Wormbase (BLAST) RNAi primary
External "Y53H1B.6" Links  Wormbase NCBI
JA:H25P06.4 Phenotypes Help with Phenotypes
Phenotype  WT
JA:H25P06.4 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_H25P06.4 (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of H25P06.4 Browse using GBrowse
Gene Graph
Gene Plot of Y53H1B.6 Browse using GBrowse
Gene Graph