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RNAi Experiment: JA:K03F8.1 Ace View of JA:K03F8.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  K03F8.1
Description of "K03F8.1"  Associated GO Term : RNA binding
KOG Annotation  Reverse transcriptase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:6511067..6512248)
Transcript overlap: 513 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 492
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.328
Wormbase (BLAST) RNAi primary
External "K03F8.1" Links  Wormbase NCBI
Gene Inhibited  K03F8.2 (acr-5)
Description of "K03F8.2"  acr-5 encodes a predicted member of the alpha subunit family of nicotinic acetylcholine receptors that is expressed in the nervous system.
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:6511067..6512248)
Transcript overlap: 223 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 161
Relative score: 0.327 (Best raw score= for Gene )
Specificity index: 0.107
Wormbase (BLAST) RNAi primary
External "K03F8.2" Links  Wormbase NCBI
Gene Inhibited  T02E9.4
Evidence for Inhibition 
Sliding Window Raw score: 356
Relative score: 0.724 (Best raw score= for Gene )
Specificity index: 0.237
External "T02E9.4" Links  Wormbase NCBI
Gene Inhibited  Y45F3A.7
Evidence for Inhibition 
Sliding Window Raw score: 418
Relative score: 0.85 (Best raw score= for Gene )
Specificity index: 0.279
External "Y45F3A.7" Links  Wormbase NCBI
Gene Inhibited  K08G2.4
Evidence for Inhibition 
Sliding Window Raw score: 72
Relative score: 0.146 (Best raw score= for Gene )
Specificity index: 0.048
External "K08G2.4" Links  Wormbase NCBI
JA:K03F8.1 Phenotypes Help with Phenotypes
Phenotype  WT
JA:K03F8.1 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_K03F8.1 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of K03F8.1 Browse using GBrowse
Gene Graph
Gene Plot of Y45F3A.7 Browse using GBrowse
Gene Graph
Gene Plot of T02E9.4 Browse using GBrowse
Gene Graph
Gene Plot of K08G2.4 Browse using GBrowse
Gene Graph
Gene Plot of K03F8.2 Browse using GBrowse
Gene Graph