Link to M01A12.4RNAiRNAiRNAiRNAi ReagentRNAi ReagentgeneMap Link to M01A12.3Link to M01A12.1RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to M01A12.3Link to M01A12.1RNAiRNAiRNAi ReagentRNAi ReagentgeneMap Link to F42C5.5RNAiRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:M01A12.1 Ace View of JA:M01A12.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  M01A12.4
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:5643453..5645712)
Transcript overlap: 559 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 496
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.466
Wormbase (BLAST) RNAi primary
External "M01A12.4" Links  Wormbase NCBI
Gene Inhibited  M01A12.1 (col-53)
Description of "M01A12.1"  Associated GO Term : phosphate transport
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:5643453..5645712)
Transcript overlap: 172 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 152
Relative score: 0.306 (Best raw score= for Gene )
Specificity index: 0.143
Wormbase (BLAST) RNAi primary
External "M01A12.1" Links  Wormbase NCBI
Gene Inhibited  M01A12.3
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (I:5643453..5645712)
Transcript overlap: 357 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 294
Relative score: 0.593 (Best raw score= for Gene )
Specificity index: 0.276
Wormbase (BLAST) RNAi primary
External "M01A12.3" Links  Wormbase NCBI
Gene Inhibited  F42C5.5
Description of "F42C5.5"  Associated GO Term : protein tyrosine phosphatase activity
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 123
Relative score: 0.248 (Best raw score= for Gene )
Specificity index: 0.115
Wormbase (BLAST) RNAi secondary
External "F42C5.5" Links  Wormbase NCBI
JA:M01A12.1 Phenotypes Help with Phenotypes
Phenotype  WT
JA:M01A12.1 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_M01A12.1 (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of M01A12.3 Browse using GBrowse
Gene Graph
Gene Plot of M01A12.4 Browse using GBrowse
Gene Graph
Gene Plot of F42C5.5 Browse using GBrowse
Gene Graph
Gene Plot of M01A12.1 Browse using GBrowse
Gene Graph