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RNAi Experiment: JA:M01E11.6 Ace View of JA:M01E11.6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  M01E11.6 (klp-15)
Description of "M01E11.6"  Associated GO Term : microtubule motor activity
KOG Annotation  Kinesin (KAR3 subfamily)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:5577419..5578554)
Transcript overlap: 1042 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 937
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.741
Wormbase (BLAST) RNAi primary
External "M01E11.6" Links  Wormbase NCBI
Gene Inhibited  C41G7.2 (klp-16)
Description of "C41G7.2"  klp-16 encodes a C-terminal motor kinesin orthologous to the Drosophila melanogaster Ncd and Saccharomyces cerevisiae Kar3; however KLP-16 along with KLP-3, KLP-15 and KLP-17 form an unique subgroup based on amino acid sequence and secondary structure analysis; klp-16 is involved in development of the nervous system in embryos and in chromosome segregation; in situ RNA hybridization experiments indicate that klp-16 is localized in the anterior nervous system in the head region of late embryos.
KOG Annotation  Kinesin (KAR3 subfamily)
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 328
Relative score: 0.35 (Best raw score= for Gene )
Specificity index: 0.259
Wormbase (BLAST) RNAi secondary
External "C41G7.2" Links  Wormbase NCBI
JA:M01E11.6 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 90 %
Larval  Gro
Adult  Him
Phenotype  Mei Enclosed
Movies/Stacks/Images  /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif Help
JA:M01E11.6 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_M01E11.6 (PCR_reagent)
Remark  multiple female pronuclei
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of C41G7.2 Browse using GBrowse
Gene Graph
Gene Plot of M01E11.6 Browse using GBrowse
Gene Graph