RNAi Card Page

RNAi Experiment: JA:M195.1

Ace View of JA:M195.1

Genes Inhibited

Gene Inhibited

M195.1 (col-77)

Description of "M195.1"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

ePCR	Status: Unique_ePCR (II:8358021..8359129) Transcript overlap: 862 nt
Sliding Window	Raw score: 799 Relative score: 1 (This gene has the best score for this RNAi reagent) Specificity index: 0.539
Wormbase (BLAST)	RNAi primary

External "M195.1" Links

Gene Inhibited

B0222.7 (col-145)

Description of "B0222.7"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 190
Specificity index: 0.128

External "B0222.7" Links

Gene Inhibited

F09G8.6 (col-91)

Description of "F09G8.6"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 190
Relative score: 0.238 (Best raw score= for Gene )
Specificity index: 0.128

External "F09G8.6" Links

Gene Inhibited

EGAP7.1 (dpy-3)

Description of "EGAP7.1"

dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 304
Relative score: 0.38 (Best raw score= for Gene )
Specificity index: 0.205

External "EGAP7.1" Links

JA:M195.1 Phenotypes

Phenotype

JA:M195.1 Experiment Details

Ace View

Laboratory

RNAi Reagent & Type