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RNAi Experiment: JA:T02H7.1 Ace View of JA:T02H7.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y38C1AB.1
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:36812..39170)
Transcript overlap: 783 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 678
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.587
Wormbase (BLAST) RNAi primary
External "Y38C1AB.1" Links  Wormbase NCBI
Gene Inhibited  Y38C1AB.5
KOG Annotation  Galactosyltransferases
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (IV:8709..11067)
Transcript overlap: 582 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 477
Relative score: 0.704 (Best raw score= for Gene )
Specificity index: 0.413
Wormbase (BLAST) RNAi primary
External "Y38C1AB.5" Links  Wormbase NCBI
Gene Inhibited  Y38C1AB.8 (frm-5)
Description of "Y38C1AB.8"  frm-5 encodes a protein that contains a FERM (Band 4.1-ezrin-radixin-moesin) domain near the center of the molecule and two C-terminal PDZ domains; by homology, FRM-5 is predicted to function as a membrane-cytoskeleton linker protein that plays a role in cell adhesion, migration, or organization of cell surface structures; however, as loss of frm-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of FRM-5 in C. elegans development and/or behavior is not yet known; the FRM-5 FERM and PDZ domains are most similar to those found in cytoplasmic protein tyrosine phosphatases, even though FRM-5 does not appear to be a phosphatase.
KOG Annotation  Membrane-associated protein tyrosine phosphatase PTP-BAS and related proteins, contain FERM domain
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 55 nt Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "Y38C1AB.8" Links  Wormbase NCBI
JA:T02H7.1 Phenotypes Help with Phenotypes
Phenotype  WT
JA:T02H7.1 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_T02H7.1 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y38C1AB.8 Browse using GBrowse
Gene Graph
Gene Plot of Y38C1AB.1 Browse using GBrowse
Gene Graph
Gene Plot of Y38C1AB.5 Browse using GBrowse
Gene Graph