RNAi Experiment: JA:T15B7.3 |
Ace View of JA:T15B7.3
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Genes Inhibited |
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Gene Inhibited |
T15B7.3 (col-143) |
Description of "T15B7.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (V:6838302..6839272)
Transcript overlap: 921 nt |
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Sliding Window |
Raw score: 858
Relative score: 0.818 (Best raw score= for Gene )
Specificity index: 0.228 |
Wormbase (BLAST) |
RNAi primary |
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External "T15B7.3" Links |
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Gene Inhibited |
T28C6.4 (col-117) |
Description of "T28C6.4" |
Associated GO Term : structural constituent of cuticle |
Evidence for Inhibition |
Sliding Window |
Raw score: 88
Specificity index: 0.023 |
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External "T28C6.4" Links |
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Gene Inhibited |
H06A10.2 (col-185) |
Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
Evidence for Inhibition |
Sliding Window |
Raw score: 194
Relative score: 0.185 (Best raw score= for Gene )
Specificity index: 0.051 |
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External "H06A10.2" Links |
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Gene Inhibited |
T13B5.4 (col-40) |
Description of "T13B5.4" |
col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 121
Specificity index: 0.032 |
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External "T13B5.4" Links |
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Gene Inhibited |
T28C6.6 (col-3) |
Description of "T28C6.6" |
col-3 encodes a collagen protein that affects body morphogenesis, larval viability, and locomotion in large scale RNAi screens; mRNA is expressed during all developmental stages examined (in embryos, during the L2 to dauer molt, during the dauer to L4 larval molt, and during the L4 to adult molt). |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 88
Specificity index: 0.023 |
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External "T28C6.6" Links |
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Gene Inhibited |
F23H12.4 (sqt-3) |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 121
Relative score: 0.115 (Best raw score= for Gene )
Specificity index: 0.032 |
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External "F23H12.4" Links |
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Gene Inhibited |
T21B4.2 (col-85) |
Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 115
Relative score: 0.11 (Best raw score= for Gene )
Specificity index: 0.031 |
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External "T21B4.2" Links |
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Gene Inhibited |
F38A3.2 (ram-2) |
Description of "F38A3.2" |
ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 393
Relative score: 0.375 (Best raw score= for Gene )
Specificity index: 0.104 |
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External "F38A3.2" Links |
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Gene Inhibited |
T15B7.4 (col-142) |
Description of "T15B7.4" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 216
Relative score: 0.206 (Best raw score= for Gene )
Specificity index: 0.057 |
Wormbase (BLAST) |
RNAi primary |
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External "T15B7.4" Links |
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Gene Inhibited |
K04H4.1 (emb-9) |
Description of "K04H4.1" |
emb-9 encodes the alpha-1 chain of Type IV basement membrane collagen most closely equivalent to human COL4A1 (OMIM:120130) on the basis of biological function; EMB-9 forms heterotrimeric Type IV collagen with LET-2, the alpha-2-like chain, and is required for the assembly and/or secretion of LET-2; EMB-9 is essential for embryonic morphogenesis, particularly epidermal elongation, and for larval development; EMB-9 is expresed primarily by body wall muscles and some somatic cells of the gonad and is detected in nearly all basement membranes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 1820
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.278 |
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External "K04H4.1" Links |
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Gene Inhibited |
C29F4.1 (col-125) |
Description of "C29F4.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 88
Relative score: 0.084 (Best raw score= for Gene )
Specificity index: 0.023 |
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External "C29F4.1" Links |
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Gene Inhibited |
C18H7.3 (col-102) |
Description of "C18H7.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 436
Relative score: 0.416 (Best raw score= for Gene )
Specificity index: 0.116 |
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External "C18H7.3" Links |
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JA:T15B7.3 Phenotypes |
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Phenotype |
WT
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JA:T15B7.3 Experiment Details |
Ace View |
Laboratory |
JA |
RNAi Reagent & Type |
sjj_T15B7.3 (PCR_reagent) |
Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
Date |
2003-1-10 |
Gene Plot of T15B7.3 |
Browse using GBrowse
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Gene Plot of T28C6.4 |
Browse using GBrowse
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Gene Plot of H06A10.2 |
Browse using GBrowse
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Gene Plot of T13B5.4 |
Browse using GBrowse
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Gene Plot of T28C6.6 |
Browse using GBrowse
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Gene Plot of F23H12.4 |
Browse using GBrowse
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Gene Plot of T21B4.2 |
Browse using GBrowse
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Gene Plot of F38A3.2 |
Browse using GBrowse
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Gene Plot of T15B7.4 |
Browse using GBrowse
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Gene Plot of K04H4.1 |
Browse using GBrowse
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Gene Plot of C18H7.3 |
Browse using GBrowse
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Gene Plot of C29F4.1 |
Browse using GBrowse
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