| RNAi Experiment: JA:T15B7.4 |
Ace View of JA:T15B7.4
|
| Genes Inhibited |
 |
| Gene Inhibited |
T15B7.4 (col-142) |
| Description of "T15B7.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (V:6833682..6834807)
Transcript overlap: 978 nt |
|
| Sliding Window |
Raw score: 916
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.316 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T15B7.4" Links |
  |
| Gene Inhibited |
T15B7.3 (col-143) |
| Description of "T15B7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 242
Relative score: 0.264 (Best raw score= for Gene )
Specificity index: 0.083 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T15B7.3" Links |
|
| Gene Inhibited |
H06A10.2 (col-185) |
| Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 203
Relative score: 0.222 (Best raw score= for Gene )
Specificity index: 0.07 |
|
| External "H06A10.2" Links |
|
| Gene Inhibited |
T13B5.4 (col-40) |
| Description of "T13B5.4" |
col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 130
Relative score: 0.142 (Best raw score= for Gene )
Specificity index: 0.045 |
|
| External "T13B5.4" Links |
|
| Gene Inhibited |
F14F7.1 (col-98) |
| Description of "F14F7.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 99
Relative score: 0.108 (Best raw score= for Gene )
Specificity index: 0.034 |
|
| External "F14F7.1" Links |
|
| Gene Inhibited |
F23H12.4 (sqt-3) |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 134
Relative score: 0.146 (Best raw score= for Gene )
Specificity index: 0.046 |
|
| External "F23H12.4" Links |
|
| Gene Inhibited |
T21B4.2 (col-85) |
| Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 115
Relative score: 0.126 (Best raw score= for Gene )
Specificity index: 0.04 |
|
| External "T21B4.2" Links |
|
| Gene Inhibited |
F54B11.2 (col-44) |
| Description of "F54B11.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 292
Relative score: 0.319 (Best raw score= for Gene )
Specificity index: 0.101 |
|
| External "F54B11.2" Links |
|
| Gene Inhibited |
Y51H4A.9 (col-137) |
| Description of "Y51H4A.9" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 139
Relative score: 0.152 (Best raw score= for Gene )
Specificity index: 0.048 |
|
| External "Y51H4A.9" Links |
|
| Gene Inhibited |
C09G5.5 (col-80) |
| Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 196
Relative score: 0.214 (Best raw score= for Gene )
Specificity index: 0.068 |
|
| External "C09G5.5" Links |
|
| Gene Inhibited |
C18H7.3 (col-102) |
| Description of "C18H7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 436
Relative score: 0.476 (Best raw score= for Gene )
Specificity index: 0.15 |
|
| External "C18H7.3" Links |
|
| JA:T15B7.4 Phenotypes |
|
|
| Phenotype |
WT
|
| JA:T15B7.4 Experiment Details |
Ace View |
| Laboratory |
JA |
| RNAi Reagent & Type |
sjj_T15B7.4 (PCR_reagent) |
| Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
| Date |
2003-1-10 |
| Gene Plot of T15B7.3 |
Browse using GBrowse
|
 |
| Gene Plot of H06A10.2 |
Browse using GBrowse
|
 |
| Gene Plot of T13B5.4 |
Browse using GBrowse
|
 |
| Gene Plot of F14F7.1 |
Browse using GBrowse
|
 |
| Gene Plot of F23H12.4 |
Browse using GBrowse
|
 |
| Gene Plot of T21B4.2 |
Browse using GBrowse
|
 |
| Gene Plot of Y51H4A.9 |
Browse using GBrowse
|
 |
| Gene Plot of F54B11.2 |
Browse using GBrowse
|
 |
| Gene Plot of T15B7.4 |
Browse using GBrowse
|
 |
| Gene Plot of C18H7.3 |
Browse using GBrowse
|
 |
| Gene Plot of C09G5.5 |
Browse using GBrowse
|
 |
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