| RNAi Experiment: JA:T21B4.2 |
Ace View of JA:T21B4.2
|
| Genes Inhibited |
 |
| Gene Inhibited |
T21B4.2 (col-85) |
| Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (II:12493595..12495154)
Transcript overlap: 939 nt |
|
| Sliding Window |
Raw score: 876
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.257 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T21B4.2" Links |
  |
| Gene Inhibited |
C50B6.4 (col-161) |
| Description of "C50B6.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 353
Relative score: 0.403 (Best raw score= for Gene )
Specificity index: 0.103 |
|
| External "C50B6.4" Links |
|
| Gene Inhibited |
C34F6.3 (col-179) |
| Description of "C34F6.3" |
Associated GO Term : phosphate transport |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 247
Specificity index: 0.072 |
|
| External "C34F6.3" Links |
|
| Gene Inhibited |
Y41E3.2 (dpy-4) |
| Description of "Y41E3.2" |
dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 114
Relative score: 0.13 (Best raw score= for Gene )
Specificity index: 0.033 |
|
| External "Y41E3.2" Links |
|
| Gene Inhibited |
Y54E10BL.2 (col-48) |
| Description of "Y54E10BL.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 284
Relative score: 0.324 (Best raw score= for Gene )
Specificity index: 0.083 |
|
| External "Y54E10BL.2" Links |
|
| Gene Inhibited |
ZC513.8 (col-43) |
| Description of "ZC513.8" |
col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 180
Relative score: 0.205 (Best raw score= for Gene )
Specificity index: 0.053 |
|
| External "ZC513.8" Links |
|
| Gene Inhibited |
C24F3.6 (col-124) |
| Description of "C24F3.6" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 92
Relative score: 0.105 (Best raw score= for Gene )
Specificity index: 0.027 |
|
| External "C24F3.6" Links |
|
| Gene Inhibited |
C34F6.2 (col-178) |
| Description of "C34F6.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 247
Relative score: 0.282 (Best raw score= for Gene )
Specificity index: 0.072 |
|
| External "C34F6.2" Links |
|
| Gene Inhibited |
Y2H9A.3 (col-162) |
| Description of "Y2H9A.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 332
Relative score: 0.379 (Best raw score= for Gene )
Specificity index: 0.097 |
|
| External "Y2H9A.3" Links |
|
| Gene Inhibited |
T28F2.6 (col-50) |
| Description of "T28F2.6" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 294
Relative score: 0.336 (Best raw score= for Gene )
Specificity index: 0.086 |
|
| External "T28F2.6" Links |
|
| Gene Inhibited |
C09G5.5 (col-80) |
| Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 248
Relative score: 0.283 (Best raw score= for Gene )
Specificity index: 0.073 |
|
| External "C09G5.5" Links |
|
| Gene Inhibited |
C09G5.4 (col-39) |
| Description of "C09G5.4" |
col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 67
Relative score: 0.076 (Best raw score= for Gene )
Specificity index: 0.02 |
|
| External "C09G5.4" Links |
|
| Gene Inhibited |
T28F2.8 (col-51) |
| Description of "T28F2.8" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 77
Relative score: 0.088 (Best raw score= for Gene )
Specificity index: 0.023 |
|
| External "T28F2.8" Links |
|
| JA:T21B4.2 Phenotypes |
|
|
| Phenotype |
WT
|
| JA:T21B4.2 Experiment Details |
Ace View |
| Laboratory |
JA |
| RNAi Reagent & Type |
sjj_T21B4.2 (PCR_reagent) |
| Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
| Date |
2003-1-10 |
| Gene Plot of C50B6.4 |
Browse using GBrowse
|
 |
| Gene Plot of Y54E10BL.2 |
Browse using GBrowse
|
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| Gene Plot of Y41E3.2 |
Browse using GBrowse
|
 |
| Gene Plot of C34F6.3 |
Browse using GBrowse
|
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| Gene Plot of C24F3.6 |
Browse using GBrowse
|
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| Gene Plot of ZC513.8 |
Browse using GBrowse
|
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| Gene Plot of C34F6.2 |
Browse using GBrowse
|
 |
| Gene Plot of Y2H9A.3 |
Browse using GBrowse
|
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| Gene Plot of T28F2.6 |
Browse using GBrowse
|
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| Gene Plot of T21B4.2 |
Browse using GBrowse
|
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| Gene Plot of C09G5.4 |
Browse using GBrowse
|
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| Gene Plot of C09G5.5 |
Browse using GBrowse
|
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| Gene Plot of T28F2.8 |
Browse using GBrowse
|
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