| RNAi Experiment: JA:T28F2.6 |
Ace View of JA:T28F2.6
|
| Genes Inhibited |
 |
| Gene Inhibited |
T28F2.6 (col-50) |
| Description of "T28F2.6" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (I:3651199..3652332)
Transcript overlap: 1035 nt |
|
| Sliding Window |
Raw score: 993
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.607 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T28F2.6" Links |
  |
| Gene Inhibited |
T21B4.2 (col-85) |
| Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 118
Relative score: 0.119 (Best raw score= for Gene )
Specificity index: 0.072 |
|
| External "T21B4.2" Links |
|
| Gene Inhibited |
Y41E3.2 (dpy-4) |
| Description of "Y41E3.2" |
dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 114
Relative score: 0.115 (Best raw score= for Gene )
Specificity index: 0.07 |
|
| External "Y41E3.2" Links |
|
| Gene Inhibited |
EGAP7.1 (dpy-3) |
| Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 142
Relative score: 0.143 (Best raw score= for Gene )
Specificity index: 0.087 |
|
| External "EGAP7.1" Links |
|
| Gene Inhibited |
ZC513.8 (col-43) |
| Description of "ZC513.8" |
col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 80
Relative score: 0.081 (Best raw score= for Gene )
Specificity index: 0.049 |
|
| External "ZC513.8" Links |
|
| Gene Inhibited |
T28F2.8 (col-51) |
| Description of "T28F2.8" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 188
Relative score: 0.189 (Best raw score= for Gene )
Specificity index: 0.115 |
|
| External "T28F2.8" Links |
|
| JA:T28F2.6 Phenotypes |
|
|
| Phenotype |
WT
|
| JA:T28F2.6 Experiment Details |
Ace View |
| Laboratory |
JA |
| RNAi Reagent & Type |
sjj_T28F2.6 (PCR_reagent) |
| Reference |
Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...." |
| Date |
2000-11-16 |
| Gene Plot of T21B4.2 |
Browse using GBrowse
|
 |
| Gene Plot of T28F2.6 |
Browse using GBrowse
|
 |
| Gene Plot of Y41E3.2 |
Browse using GBrowse
|
 |
| Gene Plot of ZC513.8 |
Browse using GBrowse
|
 |
| Gene Plot of EGAP7.1 |
Browse using GBrowse
|
 |
| Gene Plot of T28F2.8 |
Browse using GBrowse
|
 |
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