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RNAi Experiment: JA:VZK822l.1 Ace View of JA:VZK822l.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  VZK822L.1 (fat-6)
Description of "VZK822L.1"  fat-6 encodes a delta-9 fatty acid desaturase that is predicted to be mitochondrial.
KOG Annotation  Fatty acid desaturase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:11913514..11914689)
Transcript overlap: 865 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 802
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.917
Wormbase (BLAST) RNAi primary
External "VZK822L.1" Links  Wormbase NCBI
Gene Inhibited  F10D2.9 (fat-7)
Description of "F10D2.9"  fat-7 encodes an essential delta-9 fatty acid desaturase that is required for the synthesis of monounsaturated fatty acids; fat-7 can substitute for the functions of the other two fatty acid desaturases, fat-5 and fat-6; RNA interference has shown that fat-7 is required for viability and normal growth.
KOG Annotation  Fatty acid desaturase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 73
Relative score: 0.091 (Best raw score= for Gene )
Specificity index: 0.083
Wormbase (BLAST) RNAi secondary
External "F10D2.9" Links  Wormbase NCBI
JA:VZK822l.1 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 40 %
Larval  Gro
Adult  Clr
Stp brood size (6 out of 10)
JA:VZK822l.1 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_VZK822L.1 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of F10D2.9 Browse using GBrowse
Gene Graph
Gene Plot of VZK822L.1 Browse using GBrowse
Gene Graph