Link to F07B7.14RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to W09B7.3geneMap Link to W09B7.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F07B7.14geneMap Link to C33C12.11RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to B0047.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to C40A11.1Link to C40A11.9RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to K09E3.2RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y57A10A.30b.2Link to Y57A10A.30aLink to Y57A10A.30b.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to W09B7.1Link to F07B7.1Link to F53A2.6.1Link to F53A2.6.3Link to F53A2.6.2geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:W09B7.a Ace View of JA:W09B7.a
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F07B7.14
Evidence for Inhibition 
ePCR Status: Best_ePCR (V:8869250..8871668)
Transcript overlap: 1033 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 936
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.425
Wormbase (BLAST) RNAi primary
External "F07B7.14" Links  Wormbase NCBI
Gene Inhibited  W09B7.3
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (V:8827156..8829574)
Transcript overlap: 664 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 580
Relative score: 0.62 (Best raw score= for Gene )
Specificity index: 0.263
Wormbase (BLAST) RNAi primary
External "W09B7.3" Links  Wormbase NCBI
Gene Inhibited  C33C12.11
Evidence for Inhibition 
Sliding Window Raw score: 353
Relative score: 0.377 (Best raw score= for Gene )
Specificity index: 0.16
Wormbase (BLAST) RNAi primary
External "C33C12.11" Links  Wormbase NCBI
Gene Inhibited  B0047.4
Evidence for Inhibition 
Sliding Window Raw score: 63
Specificity index: 0.029
Wormbase (BLAST) RNAi primary
External "B0047.4" Links  Wormbase NCBI
Gene Inhibited  C40A11.9
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 96
Relative score: 0.103 (Best raw score= for Gene )
Specificity index: 0.044
Wormbase (BLAST) RNAi primary
External "C40A11.9" Links  Wormbase NCBI
Gene Inhibited  K09E3.2
Evidence for Inhibition 
Sliding Window Raw score: 113
Relative score: 0.121 (Best raw score= for Gene )
Specificity index: 0.051
Wormbase (BLAST) RNAi primary
External "K09E3.2" Links  Wormbase NCBI
Gene Inhibited  Y57A10A.30 (ife-5)
Description of "Y57A10A.30"  ife-5 encodes a member of the Initiation Factor 4E (eIF4E) family; it is expressed in the germ line.
KOG Annotation  Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 63
Relative score: 0.067 (Best raw score= for Gene )
Specificity index: 0.029
External "Y57A10A.30" Links  Wormbase NCBI
JA:W09B7.a Phenotypes Help with Phenotypes
Phenotype  WT
JA:W09B7.a Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_W09B7.a (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of C33C12.11 Browse using GBrowse
Gene Graph
Gene Plot of B0047.4 Browse using GBrowse
Gene Graph
Gene Plot of F07B7.14 Browse using GBrowse
Gene Graph
Gene Plot of W09B7.3 Browse using GBrowse
Gene Graph
Gene Plot of C40A11.9 Browse using GBrowse
Gene Graph
Gene Plot of Y57A10A.30 Browse using GBrowse
Gene Graph
Gene Plot of K09E3.2 Browse using GBrowse
Gene Graph