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RNAi Experiment: JA:Y104H12A.1 Ace View of JA:Y104H12A.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y104H12A.1 (nhr-41)
Description of "Y104H12A.1"  nhr-41 encodes a nuclear receptor of the NR2D1 subfamily that is orthologous to the Drosophila DHR78 nuclear receptor essential for the onset of metamorphosis, and the mammalian TR2 and TR4 receptors which are expressed in androgen-sensitive organs and brain tissue, respectively; by homology, NHR-41 likely functions as a transcription factor that, based upon RNAi experiments, plays a role in the formation of SDS-resistant dauer larvae; using two different reporter fusions, nhr-41 expression is detected in seam cells, excretory cells, and rectal epithelia, or in chemosensory neurons, gut, and head and tail hypodermis; nhr-41 mRNAs are expressed at all larval stages at precise intervals relative to molting: mRNA produced by upstream promoter sequence is detected at the time larval molts occur, while mRNA produced by promoter sequence in the fourth intron is detected at variable levels during larval development with distinct peaks of expression seen at the beginning of the intermolt.
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:1386100..1388831)
Transcript overlap: 480 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 396
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "Y104H12A.1" Links  Wormbase NCBI
Gene Inhibited  C36C9.t1
Evidence for Inhibition 
Sliding Window Raw score: 59
External "C36C9.t1" Links  Wormbase NCBI
JA:Y104H12A.1 Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y104H12A.1 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y104H12A.1 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of C36C9.T1 Browse using GBrowse
Gene Graph
Gene Plot of Y104H12A.1 Browse using GBrowse
Gene Graph