Link to Y110A2AL.14RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y71H2AM.2RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y110A2AR.2Link to Y110A2AR.3a.1Link to Y110A2AR.3a.2RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: JA:Y110A2A_1898.b Ace View of JA:Y110A2A_1898.b
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y110A2AL.14 (sqv-2)
Description of "Y110A2AL.14"  sqv-2 encodes a glycosaminoglycan galactosyltransferase II, biochemically active in vitro, that is required for cytokinesis of one-cell embryos and for vulval morphogenesis; the common requirement for SQV-2 in both cytokinesis and morphogenesis may be to promote filling an extracellular space with hygroscopic proteoglycans (either in the eggshell, or underneath the L4 cuticle), which in turn may cause the space to fill with fluid.
KOG Annotation  Galactosyltransferases
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:2892339..2893508)
Transcript overlap: 347 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 285
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.635
Wormbase (BLAST) RNAi primary
External "Y110A2AL.14" Links  Wormbase NCBI
Gene Inhibited  Y71H2AM.2
Description of "Y71H2AM.2"  Associated GO Term : nucleic acid binding
KOG Annotation  Uncharacterized conserved protein, contains C4-type Zn-finger
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 81
Relative score: 0.284 (Best raw score= for Gene )
Specificity index: 0.18
External "Y71H2AM.2" Links  Wormbase NCBI
Gene Inhibited  Y110A2AR.2 (ubc-15)
Description of "Y110A2AR.2"  ubc-15 encodes an E2 ubiquitin-conjugating enzyme predicted to mediate the covalent attachment of an activated ubiquityl moiety to a substrate protein; as loss of UBC-15 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of UBC-15 in C. elegans development and/or behavior is not yet known; by sequence similarity, however, UBC-15 is predicted to function in protein modification and turnover.
KOG Annotation  Ubiquitin-protein ligase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 83
Relative score: 0.291 (Best raw score= for Gene )
Specificity index: 0.185
Wormbase (BLAST) RNAi primary
External "Y110A2AR.2" Links  Wormbase NCBI
JA:Y110A2A_1898.b Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y110A2A_1898.b Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y110A2A_1898.b (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y71H2AM.2 Browse using GBrowse
Gene Graph
Gene Plot of Y110A2AR.2 Browse using GBrowse
Gene Graph
Gene Plot of Y110A2AL.14 Browse using GBrowse
Gene Graph