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RNAi Experiment: JA:Y116F11A.u Ace View of JA:Y116F11A.u
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  M04C3.2
KOG Annotation  Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:19449213..19451815)
Transcript overlap: 1819 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 933
Relative score: 0.575 (Best raw score= for Gene )
Specificity index: 0.338
Wormbase (BLAST) RNAi primary
External "M04C3.2" Links  Wormbase NCBI
Gene Inhibited  C08A9.2
Evidence for Inhibition 
Sliding Window Raw score: 76
Relative score: 0.047 (Best raw score= for Gene )
Specificity index: 0.028
External "C08A9.2" Links  Wormbase NCBI
Gene Inhibited  C25F9.4
KOG Annotation  Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 1624
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.588
Wormbase (BLAST) RNAi primary
External "C25F9.4" Links  Wormbase NCBI
Gene Inhibited  Y43F8B.14
KOG Annotation  Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 129
Relative score: 0.079 (Best raw score= for Gene )
Specificity index: 0.047
Wormbase (BLAST) RNAi primary
External "Y43F8B.14" Links  Wormbase NCBI
JA:Y116F11A.u Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y116F11A.u Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y116F11A.u (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of M04C3.2 Browse using GBrowse
Gene Graph
Gene Plot of C08A9.2 Browse using GBrowse
Gene Graph
Gene Plot of C25F9.4 Browse using GBrowse
Gene Graph
Gene Plot of Y43F8B.14 Browse using GBrowse
Gene Graph