Link to Y11D7A.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to K09H9.4RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y113G7A.2Link to F52E1.12Link to Y60A3A.11geneMap Link to M110.5a.1Link to M110.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F52E1.5aLink to F52E1.5bRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y113G7A.2Link to Y11D7A.6Link to Y60A3A.11Link to K09H9.4Link to M110.6geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:Y11D7A.6 Ace View of JA:Y11D7A.6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y11D7A.6
KOG Annotation  Reverse transcriptase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:9245987..9246981)
Transcript overlap: 456 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 435
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.302
Wormbase (BLAST) RNAi primary
External "Y11D7A.6" Links  Wormbase NCBI
Gene Inhibited  K09H9.4
Description of "K09H9.4"  Associated GO Term : RNA binding
Evidence for Inhibition 
Sliding Window Raw score: 141
Relative score: 0.324 (Best raw score= for Gene )
Specificity index: 0.098
Wormbase (BLAST) RNAi secondary
External "K09H9.4" Links  Wormbase NCBI
Gene Inhibited  M110.6
Description of "M110.6"  Associated GO Term : RNA binding
KOG Annotation  Reverse transcriptase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 116
Relative score: 0.267 (Best raw score= for Gene )
Specificity index: 0.08
Wormbase (BLAST) RNAi secondary
External "M110.6" Links  Wormbase NCBI
Gene Inhibited  F52E1.12
Evidence for Inhibition 
Sliding Window Raw score: 297
Relative score: 0.683 (Best raw score= for Gene )
Specificity index: 0.206
Wormbase (BLAST) RNAi primary
External "F52E1.12" Links  Wormbase NCBI
Gene Inhibited  Y113G7A.2
Evidence for Inhibition 
Sliding Window Raw score: 315
Relative score: 0.724 (Best raw score= for Gene )
Specificity index: 0.219
Wormbase (BLAST) RNAi primary
External "Y113G7A.2" Links  Wormbase NCBI
Gene Inhibited  Y60A3A.11
Evidence for Inhibition 
Sliding Window Raw score: 137
Relative score: 0.315 (Best raw score= for Gene )
Specificity index: 0.095
Wormbase (BLAST) RNAi secondary
External "Y60A3A.11" Links  Wormbase NCBI
JA:Y11D7A.6 Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y11D7A.6 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y11D7A.6 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of K09H9.4 Browse using GBrowse
Gene Graph
Gene Plot of M110.6 Browse using GBrowse
Gene Graph
Gene Plot of F52E1.12 Browse using GBrowse
Gene Graph
Gene Plot of Y113G7A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y60A3A.11 Browse using GBrowse
Gene Graph
Gene Plot of Y11D7A.6 Browse using GBrowse
Gene Graph