| RNAi Experiment: JA:Y2H9A.3 |
Ace View of JA:Y2H9A.3
|
| Genes Inhibited |
 |
| Gene Inhibited |
Y2H9A.3 (col-162) |
| Description of "Y2H9A.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (V:13444522..13446165)
Transcript overlap: 907 nt |
|
| Sliding Window |
Raw score: 865
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.268 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "Y2H9A.3" Links |
  |
| Gene Inhibited |
C50B6.4 (col-161) |
| Description of "C50B6.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 576
Relative score: 0.666 (Best raw score= for Gene )
Specificity index: 0.178 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "C50B6.4" Links |
|
| Gene Inhibited |
F55C10.3 (col-155) |
| Description of "F55C10.3" |
Associated GO Term : phosphate transport |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 69
Specificity index: 0.021 |
|
| External "F55C10.3" Links |
|
| Gene Inhibited |
Y41E3.2 (dpy-4) |
| Description of "Y41E3.2" |
dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 151
Relative score: 0.175 (Best raw score= for Gene )
Specificity index: 0.047 |
|
| External "Y41E3.2" Links |
|
| Gene Inhibited |
K02D7.3 (col-101) |
| Description of "K02D7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 224
Relative score: 0.259 (Best raw score= for Gene )
Specificity index: 0.069 |
|
| External "K02D7.3" Links |
|
| Gene Inhibited |
F57B7.3 (col-156) |
| Description of "F57B7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 443
Relative score: 0.512 (Best raw score= for Gene )
Specificity index: 0.137 |
|
| External "F57B7.3" Links |
|
| Gene Inhibited |
T21B4.2 (col-85) |
| Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 105
Relative score: 0.121 (Best raw score= for Gene )
Specificity index: 0.032 |
|
| External "T21B4.2" Links |
|
| Gene Inhibited |
F38A3.2 (ram-2) |
| Description of "F38A3.2" |
ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 237
Relative score: 0.274 (Best raw score= for Gene )
Specificity index: 0.073 |
|
| External "F38A3.2" Links |
|
| Gene Inhibited |
C34H4.4 (col-107) |
| Description of "C34H4.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 218
Relative score: 0.147 (Best raw score= for Gene )
Specificity index: 0.039 |
|
| External "C34H4.4" Links |
|
| Gene Inhibited |
C09G5.5 (col-80) |
| Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 366
Relative score: 0.423 (Best raw score= for Gene )
Specificity index: 0.113 |
|
| External "C09G5.5" Links |
|
| Gene Inhibited |
F55C10.2 (col-154) |
| Description of "F55C10.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 69
Relative score: 0.08 (Best raw score= for Gene )
Specificity index: 0.021 |
|
| External "F55C10.2" Links |
|
| JA:Y2H9A.3 Phenotypes |
|
|
| Phenotype |
WT
|
| JA:Y2H9A.3 Experiment Details |
Ace View |
| Laboratory |
JA |
| RNAi Reagent & Type |
sjj_Y2H9A.3 (PCR_reagent) |
| Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
| Date |
2003-1-10 |
| Gene Plot of C50B6.4 |
Browse using GBrowse
|
 |
| Gene Plot of K02D7.3 |
Browse using GBrowse
|
 |
| Gene Plot of Y41E3.2 |
Browse using GBrowse
|
 |
| Gene Plot of F55C10.3 |
Browse using GBrowse
|
 |
| Gene Plot of Y2H9A.3 |
Browse using GBrowse
|
 |
| Gene Plot of F57B7.3 |
Browse using GBrowse
|
 |
| Gene Plot of T21B4.2 |
Browse using GBrowse
|
 |
| Gene Plot of F38A3.2 |
Browse using GBrowse
|
 |
| Gene Plot of C34H4.4 |
Browse using GBrowse
|
 |
| Gene Plot of F55C10.2 |
Browse using GBrowse
|
 |
| Gene Plot of C09G5.5 |
Browse using GBrowse
|
 |
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