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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:Y2H9A.3 Ace View of JA:Y2H9A.3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y2H9A.3 (col-162)
Description of "Y2H9A.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:13444522..13446165)
Transcript overlap: 907 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 865
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.268
Wormbase (BLAST) RNAi primary
External "Y2H9A.3" Links  Wormbase NCBI
Gene Inhibited  C50B6.4 (col-161)
Description of "C50B6.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 576
Relative score: 0.666 (Best raw score= for Gene )
Specificity index: 0.178
Wormbase (BLAST) RNAi primary
External "C50B6.4" Links  Wormbase NCBI
Gene Inhibited  F55C10.3 (col-155)
Description of "F55C10.3"  Associated GO Term : phosphate transport
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 69
Specificity index: 0.021
External "F55C10.3" Links  Wormbase NCBI
Gene Inhibited  Y41E3.2 (dpy-4)
Description of "Y41E3.2"  dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 151
Relative score: 0.175 (Best raw score= for Gene )
Specificity index: 0.047
External "Y41E3.2" Links  Wormbase NCBI
Gene Inhibited  K02D7.3 (col-101)
Description of "K02D7.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 224
Relative score: 0.259 (Best raw score= for Gene )
Specificity index: 0.069
External "K02D7.3" Links  Wormbase NCBI
Gene Inhibited  F57B7.3 (col-156)
Description of "F57B7.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 443
Relative score: 0.512 (Best raw score= for Gene )
Specificity index: 0.137
External "F57B7.3" Links  Wormbase NCBI
Gene Inhibited  T21B4.2 (col-85)
Description of "T21B4.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 105
Relative score: 0.121 (Best raw score= for Gene )
Specificity index: 0.032
External "T21B4.2" Links  Wormbase NCBI
Gene Inhibited  F38A3.2 (ram-2)
Description of "F38A3.2"  ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 237
Relative score: 0.274 (Best raw score= for Gene )
Specificity index: 0.073
External "F38A3.2" Links  Wormbase NCBI
Gene Inhibited  C34H4.4 (col-107)
Description of "C34H4.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 218
Relative score: 0.147 (Best raw score= for Gene )
Specificity index: 0.039
External "C34H4.4" Links  Wormbase NCBI
Gene Inhibited  C09G5.5 (col-80)
Description of "C09G5.5"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 366
Relative score: 0.423 (Best raw score= for Gene )
Specificity index: 0.113
External "C09G5.5" Links  Wormbase NCBI
Gene Inhibited  F55C10.2 (col-154)
Description of "F55C10.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 69
Relative score: 0.08 (Best raw score= for Gene )
Specificity index: 0.021
External "F55C10.2" Links  Wormbase NCBI
JA:Y2H9A.3 Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y2H9A.3 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y2H9A.3 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of C50B6.4 Browse using GBrowse
Gene Graph
Gene Plot of K02D7.3 Browse using GBrowse
Gene Graph
Gene Plot of Y41E3.2 Browse using GBrowse
Gene Graph
Gene Plot of F55C10.3 Browse using GBrowse
Gene Graph
Gene Plot of Y2H9A.3 Browse using GBrowse
Gene Graph
Gene Plot of F57B7.3 Browse using GBrowse
Gene Graph
Gene Plot of T21B4.2 Browse using GBrowse
Gene Graph
Gene Plot of F38A3.2 Browse using GBrowse
Gene Graph
Gene Plot of C34H4.4 Browse using GBrowse
Gene Graph
Gene Plot of F55C10.2 Browse using GBrowse
Gene Graph
Gene Plot of C09G5.5 Browse using GBrowse
Gene Graph