Link to Y38C1AB.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y38C1AB.5geneMap Link to Y38C1AB.5RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y38C1AB.1geneMap Link to Y38C1AB.8Link to Y38C1AB.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y38C1AB.4Link to Y38C1AB.5geneMap
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RNAi Experiment: JA:Y38C1AB.f Ace View of JA:Y38C1AB.f
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y38C1AB.1
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:38380..39061)
Transcript overlap: 325 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 283
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.684
Wormbase (BLAST) RNAi primary
External "Y38C1AB.1" Links  Wormbase NCBI
Gene Inhibited  Y38C1AB.5
KOG Annotation  Galactosyltransferases
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (IV:8818..9499)
Transcript overlap: 173 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 131
Relative score: 0.463 (Best raw score= for Gene )
Specificity index: 0.316
Wormbase (BLAST) RNAi primary
External "Y38C1AB.5" Links  Wormbase NCBI
Gene Inhibited  Y38C1AB.8 (frm-5)
Description of "Y38C1AB.8"  frm-5 encodes a protein that contains a FERM (Band 4.1-ezrin-radixin-moesin) domain near the center of the molecule and two C-terminal PDZ domains; by homology, FRM-5 is predicted to function as a membrane-cytoskeleton linker protein that plays a role in cell adhesion, migration, or organization of cell surface structures; however, as loss of frm-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of FRM-5 in C. elegans development and/or behavior is not yet known; the FRM-5 FERM and PDZ domains are most similar to those found in cytoplasmic protein tyrosine phosphatases, even though FRM-5 does not appear to be a phosphatase.
KOG Annotation  Membrane-associated protein tyrosine phosphatase PTP-BAS and related proteins, contain FERM domain
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 7 nt Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "Y38C1AB.8" Links  Wormbase NCBI
JA:Y38C1AB.f Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y38C1AB.f Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y38C1AB.f (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y38C1AB.8 Browse using GBrowse
Gene Graph
Gene Plot of Y38C1AB.1 Browse using GBrowse
Gene Graph
Gene Plot of Y38C1AB.5 Browse using GBrowse
Gene Graph