RNAi Experiment: JA:Y38C1AB.l |
Ace View of JA:Y38C1AB.l
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Genes Inhibited |
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Gene Inhibited |
Y38C1AB.1 |
Evidence for Inhibition |
ePCR |
Status: Best_ePCR (IV:38380..39061)
Transcript overlap: 325 nt |
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Sliding Window |
Raw score: 304
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.734 |
Wormbase (BLAST) |
RNAi primary |
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External "Y38C1AB.1" Links |
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Gene Inhibited |
Y38C1AB.5 |
KOG Annotation  |
Galactosyltransferases
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Evidence for Inhibition |
ePCR |
Status: Top50_percentile_ePCR (IV:8818..9499)
Transcript overlap: 173 nt |
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Sliding Window |
Raw score: 110
Relative score: 0.362 (Best raw score= for Gene )
Specificity index: 0.266 |
Wormbase (BLAST) |
RNAi primary |
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External "Y38C1AB.5" Links |
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Gene Inhibited |
Y38C1AB.8 (frm-5) |
Description of "Y38C1AB.8" |
frm-5 encodes a protein that contains a FERM (Band 4.1-ezrin-radixin-moesin) domain near the center of the molecule and two C-terminal PDZ domains; by homology, FRM-5 is predicted to function as a membrane-cytoskeleton linker protein that plays a role in cell adhesion, migration, or organization of cell surface structures; however, as loss of frm-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of FRM-5 in C. elegans development and/or behavior is not yet known; the FRM-5 FERM and PDZ domains are most similar to those found in cytoplasmic protein tyrosine phosphatases, even though FRM-5 does not appear to be a phosphatase. |
KOG Annotation  |
Membrane-associated protein tyrosine phosphatase PTP-BAS and related proteins, contain FERM domain
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Evidence for Inhibition |
ePCR |
Transcript overlap: 7 nt |
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Wormbase (BLAST) |
RNAi primary |
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External "Y38C1AB.8" Links |
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JA:Y38C1AB.l Phenotypes |
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Phenotype |
WT
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JA:Y38C1AB.l Experiment Details |
Ace View |
Laboratory |
JA |
RNAi Reagent & Type |
sjj_Y38C1AB.l (PCR_reagent) |
Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
Date |
2003-1-10 |
Gene Plot of Y38C1AB.8 |
Browse using GBrowse
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Gene Plot of Y38C1AB.1 |
Browse using GBrowse
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Gene Plot of Y38C1AB.5 |
Browse using GBrowse
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