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ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y47D3A.5Link to Y75B8A.1Link to M01D7.2geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:Y38E10A.v Ace View of JA:Y38E10A.v
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y38E10A.21 (rgs-4)
Description of "Y38E10A.21"  rgs-4 encodes a regulator of G protein signaling; by homology, RGS-4 is predicted to function as a GTPase-activating protein that binds G protein alpha subunits and negatively regulates heterotrimeric G protein signaling; loss of rgs-4 activity via RNAi or a deletion mutation results in no obvious defects, and likewise, rgs-4 overexpression has no measurable effect on egg-laying behavior, locomotion, or viability; the RGS-4 expression pattern has not yet been reported.
KOG Annotation  G protein signaling regulators
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:12668936..12671631)
Transcript overlap: 605 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 458
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.615
Wormbase (BLAST) RNAi primary
External "Y38E10A.21" Links  Wormbase NCBI
Gene Inhibited  M01D7.2 (scm-1)
Description of "M01D7.2"  Associated GO Term : oxidoreductase activity
KOG Annotation  Secretory carrier membrane protein
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 122
Relative score: 0.266 (Best raw score= for Gene )
Specificity index: 0.164
External "M01D7.2" Links  Wormbase NCBI
Gene Inhibited  F47H4.3 (srz-46)
Evidence for Inhibition 
Sliding Window Raw score: 165
Relative score: 0.36 (Best raw score= for Gene )
Specificity index: 0.221
External "F47H4.3" Links  Wormbase NCBI
JA:Y38E10A.v Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y38E10A.v Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y38E10A.v (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y38E10A.21 Browse using GBrowse
Gene Graph
Gene Plot of M01D7.2 Browse using GBrowse
Gene Graph
Gene Plot of F47H4.3 Browse using GBrowse
Gene Graph