Link to Y38F2AL.3aLink to Y38F2AL.3bRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y38F2AL.3aLink to Y38F2AL.3bLink to Y38F2AL.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:Y38F2A_5743.f Ace View of JA:Y38F2A_5743.f
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y38F2AL.3 (vha-11)
Description of "Y38F2AL.3"  Associated GO Term : ATP binding
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:2313403..2314799)
Transcript overlap: 325 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 262
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.578
Wormbase (BLAST) RNAi primary
External "Y38F2AL.3" Links  Wormbase NCBI
Gene Inhibited  Y38F2AL.4 (vha-3)
Description of "Y38F2AL.4"  vha-3 encodes a 16-kDa proteolipid of the vacuolar-type H+-ATPase (V-ATPase) not required for embryonic viability; VHA-3 is 100% identical to VHA-2 with respect to amino acid sequence; expressed predominantly in the gastrointestinal and hypodermal cells and also in the excretory cell.
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (IV:2313403..2314799)
Transcript overlap: 212 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 191
Relative score: 0.729 (Best raw score= for Gene )
Specificity index: 0.422
External "Y38F2AL.4" Links  Wormbase NCBI
JA:Y38F2A_5743.f Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 80 %
Larval  Gro
Adult  Sck
Sma
Stp brood size (1 out of 5)
JA:Y38F2A_5743.f Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y38F2A_5743.f (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y38F2AL.4 Browse using GBrowse
Gene Graph
Gene Plot of Y38F2AL.3 Browse using GBrowse
Gene Graph