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RNAi Experiment: JA:Y38H6C.7 Ace View of JA:Y38H6C.7
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y38H6C.7
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:20510964..20512156)
Transcript overlap: 294 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 231
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.513
Wormbase (BLAST) RNAi primary
External "Y38H6C.7" Links  Wormbase NCBI
Gene Inhibited  Y38H6C.5
Description of "Y38H6C.5"  Associated GO Term : nucleic acid binding
Evidence for Inhibition 
Sliding Window Raw score: 101
Relative score: 0.437 (Best raw score= for Gene )
Specificity index: 0.224
Wormbase (BLAST) RNAi primary
External "Y38H6C.5" Links  Wormbase NCBI
Gene Inhibited  C09G12.1
Description of "C09G12.1"  C09G12.1 encodes a paired-like homeodomain protein of the K50 class, which has no obvious function in mass RNAi assays.
KOG Annotation  DNA-binding centromere protein B (CENP-B)
Vacuolar assembly/sorting protein VPS41
Transcription factor PRD and related proteins, contain PAX and HOX domains
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 118
Relative score: 0.511 (Best raw score= for Gene )
Specificity index: 0.262
External "C09G12.1" Links  Wormbase NCBI
JA:Y38H6C.7 Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y38H6C.7 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y38H6C.7 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y38H6C.5 Browse using GBrowse
Gene Graph
Gene Plot of C09G12.1 Browse using GBrowse
Gene Graph
Gene Plot of Y38H6C.7 Browse using GBrowse
Gene Graph