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RNAi Experiment: JA:Y39A3C_83.d Ace View of JA:Y39A3C_83.d
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y39A3CR.4 (ddp-1)
Description of "Y39A3CR.4"  ddp-1 encodes the C. elegans ortholog of Saccharomyces cerevisiae Tim8p and human deafness/dystonia peptide (DDP; OMIM:300356, mutated in Mohr-Tranebjaerg syndrome); by homology, DDP-1 is predicted to be part of a heterooligomeric complex that localizes to the mitochondrial intermembrane space and facilitates translocation of proteins from the cytosol to the inner mitochondrial membrane; loss of ddp-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, indicating that ddp-1 is not essential for C. elegans development or may function redundantly with its paralogs, TIN-9, -10, and -13.
KOG Annotation  Mitochondrial import inner membrane translocase, subunit TIM8
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:1859808..1860667)
Transcript overlap: 346 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 283
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.598
Wormbase (BLAST) RNAi primary
External "Y39A3CR.4" Links  Wormbase NCBI
Gene Inhibited  Y39A3CR.3
Description of "Y39A3CR.3"  Associated GO Term : binding
KOG Annotation  Predicted calmodulin-binding protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (III:1859808..1860667)
Transcript overlap: 190 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 190
Relative score: 0.671 (Best raw score= for Gene )
Specificity index: 0.402
Wormbase (BLAST) RNAi primary
External "Y39A3CR.3" Links  Wormbase NCBI
JA:Y39A3C_83.d Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y39A3C_83.d Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y39A3C_83.d (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y39A3CR.4 Browse using GBrowse
Gene Graph
Gene Plot of Y39A3CR.3 Browse using GBrowse
Gene Graph