Link to Y39E4A.3bLink to Y39E4A.3a.1Link to Y39E4A.3a.3Link to Y39E4A.3a.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to C26E6.11RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y43F4A.4RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F37D6.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: JA:Y39E4A.3 Ace View of JA:Y39E4A.3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y39E4A.3
Description of "Y39E4A.3"  Y39E4A.3 is orthologous to the human gene MAPLE SYRUP URINE DISEASE, TYPE IA (MSUD, TYPE IA; E1-alpha subunit of branched-chain keto acid dehydrogenase; OMIM:248600), which when mutated leads to maple syrup urine disease; Y39E4A.3 protein is predicted to be mitochondrial.
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:12969098..12971355)
Transcript overlap: 844 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 779
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.699
Wormbase (BLAST) RNAi primary
External "Y39E4A.3" Links  Wormbase NCBI
Gene Inhibited  C26E6.11 (tag-339)
Evidence for Inhibition 
Sliding Window Raw score: 139
Relative score: 0.183 (Best raw score= for Gene )
Specificity index: 0.128
Wormbase (BLAST) RNAi primary
External "C26E6.11" Links  Wormbase NCBI
Gene Inhibited  Y43F4A.4
KOG Annotation  Branched chain alpha-keto acid dehydrogenase complex, alpha subunit
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 112
Relative score: 0.147 (Best raw score= for Gene )
Specificity index: 0.103
Wormbase (BLAST) RNAi secondary
External "Y43F4A.4" Links  Wormbase NCBI
Gene Inhibited  F37D6.1 (mus-101)
Description of "F37D6.1"  Associated GO Term : intracellular
KOG Annotation  Nucleotide excision repair factor NEF2, RAD4/CUT5 component
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 77
Relative score: 0.101 (Best raw score= for Gene )
Specificity index: 0.071
Wormbase (BLAST) RNAi primary
External "F37D6.1" Links  Wormbase NCBI
JA:Y39E4A.3 Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y39E4A.3 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y39E4A.3 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of C26E6.11 Browse using GBrowse
Gene Graph
Gene Plot of Y39E4A.3 Browse using GBrowse
Gene Graph
Gene Plot of Y43F4A.4 Browse using GBrowse
Gene Graph
Gene Plot of F37D6.1 Browse using GBrowse
Gene Graph