| RNAi Experiment: JA:Y41E3.2 |
Ace View of JA:Y41E3.2
|
| Genes Inhibited |
 |
| Gene Inhibited |
Y41E3.2 (dpy-4) |
| Description of "Y41E3.2" |
dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (IV:14985585..14986715)
Transcript overlap: 892 nt |
|
| Sliding Window |
Raw score: 809
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.237 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "Y41E3.2" Links |
  |
| Gene Inhibited |
H06A10.2 (col-185) |
| Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 201
Relative score: 0.248 (Best raw score= for Gene )
Specificity index: 0.059 |
|
| External "H06A10.2" Links |
|
| Gene Inhibited |
T13B5.4 (col-40) |
| Description of "T13B5.4" |
col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 121
Relative score: 0.15 (Best raw score= for Gene )
Specificity index: 0.035 |
|
| External "T13B5.4" Links |
|
| Gene Inhibited |
EGAP7.1 (dpy-3) |
| Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 380
Relative score: 0.47 (Best raw score= for Gene )
Specificity index: 0.111 |
|
| External "EGAP7.1" Links |
|
| Gene Inhibited |
F23H12.4 (sqt-3) |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 332
Relative score: 0.41 (Best raw score= for Gene )
Specificity index: 0.097 |
|
| External "F23H12.4" Links |
|
| Gene Inhibited |
Y2H9A.3 (col-162) |
| Description of "Y2H9A.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 442
Relative score: 0.546 (Best raw score= for Gene )
Specificity index: 0.13 |
|
| External "Y2H9A.3" Links |
|
| Gene Inhibited |
T21B4.2 (col-85) |
| Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 133
Relative score: 0.164 (Best raw score= for Gene )
Specificity index: 0.039 |
|
| External "T21B4.2" Links |
|
| Gene Inhibited |
F54D1.2 (col-126) |
| Description of "F54D1.2" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 241
Specificity index: 0.071 |
|
| External "F54D1.2" Links |
|
| Gene Inhibited |
F54B11.2 (col-44) |
| Description of "F54B11.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 314
Relative score: 0.388 (Best raw score= for Gene )
Specificity index: 0.092 |
|
| External "F54B11.2" Links |
|
| Gene Inhibited |
F54D1.3 (col-127) |
| Description of "F54D1.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 241
Relative score: 0.298 (Best raw score= for Gene )
Specificity index: 0.071 |
|
| External "F54D1.3" Links |
|
| Gene Inhibited |
C09G5.5 (col-80) |
| Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 199
Relative score: 0.246 (Best raw score= for Gene )
Specificity index: 0.058 |
|
| External "C09G5.5" Links |
|
| JA:Y41E3.2 Phenotypes |
|
|
| Adult |
Dpy
|
| JA:Y41E3.2 Experiment Details |
Ace View |
| Laboratory |
JA |
| RNAi Reagent & Type |
sjj_Y41E3.2 (PCR_reagent) |
| Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
| Date |
2003-1-10 |
| Gene Plot of H06A10.2 |
Browse using GBrowse
|
 |
| Gene Plot of T13B5.4 |
Browse using GBrowse
|
 |
| Gene Plot of Y41E3.2 |
Browse using GBrowse
|
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| Gene Plot of EGAP7.1 |
Browse using GBrowse
|
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| Gene Plot of F23H12.4 |
Browse using GBrowse
|
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| Gene Plot of Y2H9A.3 |
Browse using GBrowse
|
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| Gene Plot of T21B4.2 |
Browse using GBrowse
|
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| Gene Plot of F54D1.2 |
Browse using GBrowse
|
 |
| Gene Plot of F54B11.2 |
Browse using GBrowse
|
 |
| Gene Plot of F54D1.3 |
Browse using GBrowse
|
 |
| Gene Plot of C09G5.5 |
Browse using GBrowse
|
 |
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