Link to Y41E3.3Link to Y41E3.2RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:Y41E3.2 Ace View of JA:Y41E3.2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y41E3.2 (dpy-4)
Description of "Y41E3.2"  dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:14985585..14986715)
Transcript overlap: 892 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 809
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.237
Wormbase (BLAST) RNAi primary
External "Y41E3.2" Links  Wormbase NCBI
Gene Inhibited  H06A10.2 (col-185)
Description of "H06A10.2"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 201
Relative score: 0.248 (Best raw score= for Gene )
Specificity index: 0.059
External "H06A10.2" Links  Wormbase NCBI
Gene Inhibited  T13B5.4 (col-40)
Description of "T13B5.4"  col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 121
Relative score: 0.15 (Best raw score= for Gene )
Specificity index: 0.035
External "T13B5.4" Links  Wormbase NCBI
Gene Inhibited  EGAP7.1 (dpy-3)
Description of "EGAP7.1"  dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 380
Relative score: 0.47 (Best raw score= for Gene )
Specificity index: 0.111
External "EGAP7.1" Links  Wormbase NCBI
Gene Inhibited  F23H12.4 (sqt-3)
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 332
Relative score: 0.41 (Best raw score= for Gene )
Specificity index: 0.097
External "F23H12.4" Links  Wormbase NCBI
Gene Inhibited  Y2H9A.3 (col-162)
Description of "Y2H9A.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 442
Relative score: 0.546 (Best raw score= for Gene )
Specificity index: 0.13
External "Y2H9A.3" Links  Wormbase NCBI
Gene Inhibited  T21B4.2 (col-85)
Description of "T21B4.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 133
Relative score: 0.164 (Best raw score= for Gene )
Specificity index: 0.039
External "T21B4.2" Links  Wormbase NCBI
Gene Inhibited  F54D1.2 (col-126)
Description of "F54D1.2"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 241
Specificity index: 0.071
External "F54D1.2" Links  Wormbase NCBI
Gene Inhibited  F54B11.2 (col-44)
Description of "F54B11.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 314
Relative score: 0.388 (Best raw score= for Gene )
Specificity index: 0.092
External "F54B11.2" Links  Wormbase NCBI
Gene Inhibited  F54D1.3 (col-127)
Description of "F54D1.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 241
Relative score: 0.298 (Best raw score= for Gene )
Specificity index: 0.071
External "F54D1.3" Links  Wormbase NCBI
Gene Inhibited  C09G5.5 (col-80)
Description of "C09G5.5"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 199
Relative score: 0.246 (Best raw score= for Gene )
Specificity index: 0.058
External "C09G5.5" Links  Wormbase NCBI
JA:Y41E3.2 Phenotypes Help with Phenotypes
Adult  Dpy
JA:Y41E3.2 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y41E3.2 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of H06A10.2 Browse using GBrowse
Gene Graph
Gene Plot of T13B5.4 Browse using GBrowse
Gene Graph
Gene Plot of Y41E3.2 Browse using GBrowse
Gene Graph
Gene Plot of EGAP7.1 Browse using GBrowse
Gene Graph
Gene Plot of F23H12.4 Browse using GBrowse
Gene Graph
Gene Plot of Y2H9A.3 Browse using GBrowse
Gene Graph
Gene Plot of T21B4.2 Browse using GBrowse
Gene Graph
Gene Plot of F54D1.2 Browse using GBrowse
Gene Graph
Gene Plot of F54B11.2 Browse using GBrowse
Gene Graph
Gene Plot of F54D1.3 Browse using GBrowse
Gene Graph
Gene Plot of C09G5.5 Browse using GBrowse
Gene Graph