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RNAi Experiment: JA:Y48A5A.1 Ace View of JA:Y48A5A.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y48A5A.1
KOG Annotation  Uncharacterized conserved protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:1964128..1966331)
Transcript overlap: 510 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 468
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.586
Wormbase (BLAST) RNAi primary
External "Y48A5A.1" Links  Wormbase NCBI
Gene Inhibited  Y48A5A.2 (ulp-3)
Description of "Y48A5A.2"  Associated GO Term : cysteine-type peptidase activity
KOG Annotation  Sentrin-specific cysteine protease (Ulp1 family)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (IV:1964128..1966331)
Transcript overlap: 372 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 330
Relative score: 0.705 (Best raw score= for Gene )
Specificity index: 0.414
Wormbase (BLAST) RNAi primary
External "Y48A5A.2" Links  Wormbase NCBI
JA:Y48A5A.1 Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y48A5A.1 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y48A5A.1 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y48A5A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y48A5A.1 Browse using GBrowse
Gene Graph