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RNAi Experiment: JA:Y48G1C_55.a Ace View of JA:Y48G1C_55.a
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y48G1BL.2 (atm-1)
Description of "Y48G1BL.2"  atm-1 encodes an ortholog of human ATM (OMIM:208900) that is required for the checkpoint response to DNA damage; human ATM encodes a phosphatidylinositol-3 kinase homolog that is biochemically activated by cellular irradiation, and mutation of ATM leads to ataxia-telengiectasia.
KOG Annotation  Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:202984..205414)
Transcript overlap: 1006 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 880
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.814
Wormbase (BLAST) RNAi primary
External "Y48G1BL.2" Links  Wormbase NCBI
Gene Inhibited  Y48A6C.5 (pha-1)
Evidence for Inhibition 
Sliding Window Raw score: 201
Relative score: 0.228 (Best raw score= for Gene )
Specificity index: 0.186
External "Y48A6C.5" Links  Wormbase NCBI
JA:Y48G1C_55.a Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y48G1C_55.a Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y48G1C_55.a (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of Y48G1BL.2 Browse using GBrowse
Gene Graph
Gene Plot of Y48A6C.5 Browse using GBrowse
Gene Graph