Link to Y48G1BL.1Link to Y48G1BL.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to B0273.3Link to F18A11.6Link to Y48G1BM.1geneMap Link to Y48G1BL.1Link to Y48G1BL.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to C06A5.5Link to C06A5.10RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y76G2A.1Link to Y76G2A.2geneMap Link to Y76G2A.2Link to Y76G2A.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to C06A5.5Link to F14D2.9Link to F44F4.2.2Link to F44F4.2.1geneMap Link to B0273.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F18A11.6Link to Y48G1BM.1Link to Y48G1BL.1geneMap Link to F18A11.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to B0273.3Link to Y48G1BM.1Link to Y48G1BL.1geneMap Link to Y76G2A.2Link to Y76G2A.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to C06A5.10Link to C06A5.5geneMap Link to Y48G1BM.1Link to Y48G1BM.8RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to B0273.2.1Link to F18A11.1Link to Y48G1BL.3Link to B0273.2.2Link to B0273.3Link to F18A11.6Link to Y48G1BL.1geneMap Link to C06A5.5Link to C06A5.10RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F44F4.2.2Link to Y76G2A.1Link to F44F4.2.1Link to F14D2.9geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:Y48G1C_55.c Ace View of JA:Y48G1C_55.c
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y48G1BL.1
KOG Annotation  Small nuclear RNA activating protein complex - 50kD subunit (SNAP50)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:215979..218231)
Transcript overlap: 773 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 668
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.228
Wormbase (BLAST) RNAi primary
External "Y48G1BL.1" Links  Wormbase NCBI
Gene Inhibited  Y48G1BL.4
KOG Annotation  Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:215979..218231)
Transcript overlap: 240 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 177
Relative score: 0.265 (Best raw score= for Gene )
Specificity index: 0.06
Wormbase (BLAST) RNAi primary
External "Y48G1BL.4" Links  Wormbase NCBI
Gene Inhibited  C06A5.10
Evidence for Inhibition 
Sliding Window Raw score: 93
Relative score: 0.139 (Best raw score= for Gene )
Specificity index: 0.032
Wormbase (BLAST) RNAi primary
External "C06A5.10" Links  Wormbase NCBI
Gene Inhibited  Y76G2A.1
Evidence for Inhibition 
Sliding Window Raw score: 74
Specificity index: 0.025
External "Y76G2A.1" Links  Wormbase NCBI
Gene Inhibited  B0273.3
KOG Annotation  Small nuclear RNA activating protein complex - 50kD subunit (SNAP50)
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 586
Relative score: 0.877 (Best raw score= for Gene )
Specificity index: 0.2
Wormbase (BLAST) RNAi primary
External "B0273.3" Links  Wormbase NCBI
Gene Inhibited  F18A11.6
KOG Annotation  Small nuclear RNA activating protein complex - 50kD subunit (SNAP50)
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 610
Relative score: 0.913 (Best raw score= for Gene )
Specificity index: 0.208
Wormbase (BLAST) RNAi primary
External "F18A11.6" Links  Wormbase NCBI
Gene Inhibited  Y76G2A.2
Evidence for Inhibition 
Sliding Window Raw score: 72
Relative score: 0.108 (Best raw score= for Gene )
Specificity index: 0.025
Wormbase (BLAST) RNAi primary
External "Y76G2A.2" Links  Wormbase NCBI
Gene Inhibited  Y48G1BM.1
KOG Annotation  Small nuclear RNA activating protein complex - 50kD subunit (SNAP50)
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 582
Relative score: 0.871 (Best raw score= for Gene )
Specificity index: 0.198
Wormbase (BLAST) RNAi primary
External "Y48G1BM.1" Links  Wormbase NCBI
Gene Inhibited  C06A5.5
KOG Annotation  Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 74
Relative score: 0.111 (Best raw score= for Gene )
Specificity index: 0.025
External "C06A5.5" Links  Wormbase NCBI
JA:Y48G1C_55.c Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y48G1C_55.c Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y48G1C_55.c (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of C06A5.10 Browse using GBrowse
Gene Graph
Gene Plot of Y48G1BL.4 Browse using GBrowse
Gene Graph
Gene Plot of Y76G2A.1 Browse using GBrowse
Gene Graph
Gene Plot of Y48G1BL.1 Browse using GBrowse
Gene Graph
Gene Plot of B0273.3 Browse using GBrowse
Gene Graph
Gene Plot of F18A11.6 Browse using GBrowse
Gene Graph
Gene Plot of Y76G2A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y48G1BM.1 Browse using GBrowse
Gene Graph
Gene Plot of C06A5.5 Browse using GBrowse
Gene Graph