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RNAi Experiment: JA:Y50C1_320.a Ace View of JA:Y50C1_320.a
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y50C1A.1
Description of "Y50C1A.1"  The Y50C1A.1 gene encodes an A20-like protease homolog that may be involved in apoptosis.
KOG Annotation  NF-kappa B regulator AP20/Cezanne
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:401370..403868)
Transcript overlap: 422 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 338
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.531
Wormbase (BLAST) RNAi primary
External "Y50C1A.1" Links  Wormbase NCBI
Gene Inhibited  Y39A3A.7 (srz-86)
Evidence for Inhibition 
Sliding Window Raw score: 115
Relative score: 0.34 (Best raw score= for Gene )
Specificity index: 0.181
External "Y39A3A.7" Links  Wormbase NCBI
Gene Inhibited  C13B9.1
Evidence for Inhibition 
Sliding Window Raw score: 183
Relative score: 0.541 (Best raw score= for Gene )
Specificity index: 0.288
External "C13B9.1" Links  Wormbase NCBI
JA:Y50C1_320.a Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y50C1_320.a Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y50C1_320.a (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of Y50C1A.1 Browse using GBrowse
Gene Graph
Gene Plot of Y39A3A.7 Browse using GBrowse
Gene Graph
Gene Plot of C13B9.1 Browse using GBrowse
Gene Graph