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RNAi Experiment: JA:Y50D4A_20.a Ace View of JA:Y50D4A_20.a
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y50D4C.4 (sqv-6)
Description of "Y50D4C.4"  sqv-6 encodes a xylosyltransferase, active in cell culture, that is required for cytokinesis of one-cell embryos and for vulval morphogenesis; SQV-6 is predicted to begin the synthesis of glycosaminoglycans by adding xylose to their protein cores; the common requirement for SQV-6 in both cytokinesis and morphogenesis may be to promote filling an extracellular space with hygroscopic proteoglycans (either in the eggshell, or underneath the L4 cuticle), which in turn may cause the space to fill with fluid.
KOG Annotation  Branching enzyme
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:951337..953223)
Transcript overlap: 459 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 396
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.852
Wormbase (BLAST) RNAi primary
External "Y50D4C.4" Links  Wormbase NCBI
Gene Inhibited  Y71H2AM.2
Description of "Y71H2AM.2"  Associated GO Term : nucleic acid binding
KOG Annotation  Uncharacterized conserved protein, contains C4-type Zn-finger
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 69
Relative score: 0.174 (Best raw score= for Gene )
Specificity index: 0.148
External "Y71H2AM.2" Links  Wormbase NCBI
JA:Y50D4A_20.a Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y50D4A_20.a Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y50D4A_20.a (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y71H2AM.2 Browse using GBrowse
Gene Graph
Gene Plot of Y50D4C.4 Browse using GBrowse
Gene Graph