RNAi Experiment: JA:Y51H4A.i |
Ace View of JA:Y51H4A.i
|
Genes Inhibited |
 |
Gene Inhibited |
Y51H4A.9 (col-137) |
Description of "Y51H4A.9" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (IV:16601080..16602742)
Transcript overlap: 1128 nt |
|
Sliding Window |
Raw score: 1044
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.378 |
Wormbase (BLAST) |
RNAi primary |
|
External "Y51H4A.9" Links |
 |
Gene Inhibited |
T15B7.3 (col-143) |
Description of "T15B7.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 438
Relative score: 0.42 (Best raw score= for Gene )
Specificity index: 0.159 |
|
External "T15B7.3" Links |
 |
Gene Inhibited |
F11G11.12 (col-73) |
Description of "F11G11.12" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 289
Relative score: 0.277 (Best raw score= for Gene )
Specificity index: 0.105 |
|
External "F11G11.12" Links |
 |
Gene Inhibited |
Y54E10BL.2 (col-48) |
Description of "Y54E10BL.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 284
Relative score: 0.272 (Best raw score= for Gene )
Specificity index: 0.103 |
|
External "Y54E10BL.2" Links |
 |
Gene Inhibited |
EGAP7.1 (dpy-3) |
Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 357
Relative score: 0.342 (Best raw score= for Gene )
Specificity index: 0.129 |
|
External "EGAP7.1" Links |
 |
Gene Inhibited |
ZC513.8 (col-43) |
Description of "ZC513.8" |
col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 76
Relative score: 0.073 (Best raw score= for Gene )
Specificity index: 0.028 |
|
External "ZC513.8" Links |
 |
Gene Inhibited |
F08G5.4 (col-130) |
Description of "F08G5.4" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 272
Relative score: 0.261 (Best raw score= for Gene )
Specificity index: 0.099 |
|
External "F08G5.4" Links |
 |
JA:Y51H4A.i Phenotypes |
|
 |
Phenotype |
WT
|
JA:Y51H4A.i Experiment Details |
Ace View |
Laboratory |
JA |
RNAi Reagent & Type |
sjj_Y51H4A.i (PCR_reagent) |
Reference |
Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...." |
Date |
2003-1-10 |
Gene Plot of T15B7.3 |
Browse using GBrowse
|
 |
Gene Plot of Y51H4A.9 |
Browse using GBrowse
|
 |
Gene Plot of Y54E10BL.2 |
Browse using GBrowse
|
 |
Gene Plot of F11G11.12 |
Browse using GBrowse
|
 |
Gene Plot of F08G5.4 |
Browse using GBrowse
|
 |
Gene Plot of ZC513.8 |
Browse using GBrowse
|
 |
Gene Plot of EGAP7.1 |
Browse using GBrowse
|
 |