RNAi Card Page

RNAi Experiment: JA:Y51H4A.i

Ace View of JA:Y51H4A.i

Genes Inhibited

Gene Inhibited

Y51H4A.9 (col-137)

Description of "Y51H4A.9"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

ePCR	Status: Unique_ePCR (IV:16601080..16602742) Transcript overlap: 1128 nt
Sliding Window	Raw score: 1044 Relative score: 1 (This gene has the best score for this RNAi reagent) Specificity index: 0.378
Wormbase (BLAST)	RNAi primary

External "Y51H4A.9" Links

Gene Inhibited

T15B7.3 (col-143)

Description of "T15B7.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 438
Relative score: 0.42 (Best raw score= for Gene )
Specificity index: 0.159

External "T15B7.3" Links

Gene Inhibited

F11G11.12 (col-73)

Description of "F11G11.12"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 289
Relative score: 0.277 (Best raw score= for Gene )
Specificity index: 0.105

External "F11G11.12" Links

Gene Inhibited

Y54E10BL.2 (col-48)

Description of "Y54E10BL.2"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 284
Relative score: 0.272 (Best raw score= for Gene )
Specificity index: 0.103

External "Y54E10BL.2" Links

Gene Inhibited

EGAP7.1 (dpy-3)

Description of "EGAP7.1"

dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 357
Relative score: 0.342 (Best raw score= for Gene )
Specificity index: 0.129

External "EGAP7.1" Links

Gene Inhibited

ZC513.8 (col-43)

Description of "ZC513.8"

col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens.

KOG Annotation

Collagens (type IV and type XIII), and related proteins