Link to Y53F4B.7RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F59H6.5Link to ZK250.9Link to Y16E11A.2Link to Y53F4B.26Link to F33H12.6geneMap Link to T02H6.3RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y16E11A.2RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to ZK250.10Link to F33H12.6Link to F59H6.5Link to ZK250.9Link to Y46B2A.2Link to Y53F4B.26Link to Y53F4B.7geneMap Link to Y54B9A.1RNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to T25D1.3RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y116A8C.41RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y53F4B.26RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y16E11A.2Link to F33H12.6Link to F59H6.5Link to ZK250.9Link to Y53F4B.7geneMap Link to F59H6.5RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y16E11A.2Link to Y53F4B.26Link to ZK250.9Link to Y53F4B.7Link to F33H12.6Link to Y46B2A.2Link to ZK250.10geneMap Link to F33H12.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to ZK250.10Link to Y16E11A.2Link to ZK250.9Link to F59H6.5Link to Y46B2A.2geneMap Link to Y54F10AM.7RNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y46B2A.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to ZK250.10Link to Y16E11A.2Link to F33H12.6Link to F59H6.5Link to ZK250.9Link to Y53F4B.26Link to Y53F4B.7geneMap Link to K12B6.7RNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to T22G5.3Link to Y48A6C.2Link to F21D9.6geneMap Link to ZK250.9RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F33H12.6Link to F59H6.5Link to ZK250.10Link to Y16E11A.2Link to Y46B2A.2Link to Y53F4B.26Link to Y53F4B.7geneMap Link to T05A7.9RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:Y53F4B.j Ace View of JA:Y53F4B.j
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y53F4B.7
KOG Annotation  DNA helicase PIF1/RRM3
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:14992462..14994417)
Transcript overlap: 459 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 396
Relative score: 0.356 (Best raw score= for Gene )
Specificity index: 0.098
Wormbase (BLAST) RNAi primary
External "Y53F4B.7" Links  Wormbase NCBI
Gene Inhibited  T02H6.3
Evidence for Inhibition 
Sliding Window Raw score: 1112
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.275
External "T02H6.3" Links  Wormbase NCBI
Gene Inhibited  Y16E11A.2
KOG Annotation  DNA helicase PIF1/RRM3
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 372
Specificity index: 0.092
External "Y16E11A.2" Links  Wormbase NCBI
Gene Inhibited  Y54B9A.1
Evidence for Inhibition 
Sliding Window Raw score: 72
Relative score: 0.065 (Best raw score= for Gene )
Specificity index: 0.018
External "Y54B9A.1" Links  Wormbase NCBI
Gene Inhibited  T25D1.3
Description of "T25D1.3"  This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
Evidence for Inhibition 
Sliding Window Raw score: 90
Relative score: 0.081 (Best raw score= for Gene )
Specificity index: 0.022
External "T25D1.3" Links  Wormbase NCBI
Gene Inhibited  Y116A8C.41
Description of "Y116A8C.41"  Associated GO Term : G-protein coupled receptor activity
Evidence for Inhibition 
Sliding Window Raw score: 73
Relative score: 0.066 (Best raw score= for Gene )
Specificity index: 0.018
External "Y116A8C.41" Links  Wormbase NCBI
Gene Inhibited  Y53F4B.26
Evidence for Inhibition 
Sliding Window Raw score: 416
Relative score: 0.374 (Best raw score= for Gene )
Specificity index: 0.103
External "Y53F4B.26" Links  Wormbase NCBI
Gene Inhibited  F59H6.5
KOG Annotation  DNA helicase PIF1/RRM3
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 352
Relative score: 0.317 (Best raw score= for Gene )
Specificity index: 0.087
External "F59H6.5" Links  Wormbase NCBI
Gene Inhibited  F33H12.6
KOG Annotation  DNA helicase PIF1/RRM3
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 314
Relative score: 0.282 (Best raw score= for Gene )
Specificity index: 0.078
External "F33H12.6" Links  Wormbase NCBI
Gene Inhibited  Y54F10AM.7
Evidence for Inhibition 
Sliding Window Raw score: 146
Relative score: 0.131 (Best raw score= for Gene )
Specificity index: 0.036
External "Y54F10AM.7" Links  Wormbase NCBI
Gene Inhibited  Y46B2A.2
KOG Annotation  DNA helicase PIF1/RRM3
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 101
Relative score: 0.091 (Best raw score= for Gene )
Specificity index: 0.025
External "Y46B2A.2" Links  Wormbase NCBI
Gene Inhibited  K12B6.7
Evidence for Inhibition 
Sliding Window Raw score: 160
Relative score: 0.144 (Best raw score= for Gene )
Specificity index: 0.04
External "K12B6.7" Links  Wormbase NCBI
Gene Inhibited  ZK250.9
Evidence for Inhibition 
Sliding Window Raw score: 372
Relative score: 0.335 (Best raw score= for Gene )
Specificity index: 0.092
External "ZK250.9" Links  Wormbase NCBI
Gene Inhibited  T05A7.9
Evidence for Inhibition 
Sliding Window Raw score: 71
Relative score: 0.064 (Best raw score= for Gene )
Specificity index: 0.018
External "T05A7.9" Links  Wormbase NCBI
JA:Y53F4B.j Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y53F4B.j Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y53F4B.j (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of T02H6.3 Browse using GBrowse
Gene Graph
Gene Plot of Y16E11A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y54B9A.1 Browse using GBrowse
Gene Graph
Gene Plot of T25D1.3 Browse using GBrowse
Gene Graph
Gene Plot of Y53F4B.7 Browse using GBrowse
Gene Graph
Gene Plot of Y116A8C.41 Browse using GBrowse
Gene Graph
Gene Plot of F33H12.6 Browse using GBrowse
Gene Graph
Gene Plot of Y53F4B.26 Browse using GBrowse
Gene Graph
Gene Plot of F59H6.5 Browse using GBrowse
Gene Graph
Gene Plot of Y46B2A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y54F10AM.7 Browse using GBrowse
Gene Graph
Gene Plot of K12B6.7 Browse using GBrowse
Gene Graph
Gene Plot of ZK250.9 Browse using GBrowse
Gene Graph
Gene Plot of T05A7.9 Browse using GBrowse
Gene Graph