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RNAi Experiment: JA:Y53H1A.d Ace View of JA:Y53H1A.d
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y53H1A.2
Description of "Y53H1A.2"  Associated GO Term : nucleic acid binding
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:11222523..11225213)
Transcript overlap: 699 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 594
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.825
Wormbase (BLAST) RNAi primary
External "Y53H1A.2" Links  Wormbase NCBI
Gene Inhibited  Y53H1A.5
Description of "Y53H1A.5"  Associated GO Term : transcription factor activity
KOG Annotation  CCAAT-binding factor, subunit B (HAP2)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:11222523..11225213)
Transcript overlap: 230 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 126
Relative score: 0.212 (Best raw score= for Gene )
Specificity index: 0.175
Wormbase (BLAST) RNAi primary
External "Y53H1A.5" Links  Wormbase NCBI
JA:Y53H1A.d Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y53H1A.d Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y53H1A.d (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of Y53H1A.5 Browse using GBrowse
Gene Graph
Gene Plot of Y53H1A.2 Browse using GBrowse
Gene Graph