Link to H25P06.4RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y53H1B.6geneMap Link to Y53H1B.6RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to H25P06.4geneMap Link to B0047.1bLink to B0047.1aRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:Y53H1B.d Ace View of JA:Y53H1B.d
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  H25P06.4
Description of "H25P06.4"  Associated GO Term : protein dimerization activity
KOG Annotation  Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily)
Tam3-transposase (Ac family)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:11308158..11310551)
Transcript overlap: 709 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 583
Relative score: 0.965 (Best raw score= for Gene )
Specificity index: 0.467
Wormbase (BLAST) RNAi primary
External "H25P06.4" Links  Wormbase NCBI
Gene Inhibited  Y53H1B.6
Description of "Y53H1B.6"  Associated GO Term : calpain activity
KOG Annotation  Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:11302768..11305161)
Transcript overlap: 709 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 604
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.484
Wormbase (BLAST) RNAi primary
External "Y53H1B.6" Links  Wormbase NCBI
Gene Inhibited  B0047.1 (bath-20)
Description of "B0047.1"  Associated GO Term : protein binding
Evidence for Inhibition 
Sliding Window Raw score: 61
Relative score: 0.101 (Best raw score= for Gene )
Specificity index: 0.049
External "B0047.1" Links  Wormbase NCBI
JA:Y53H1B.d Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y53H1B.d Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y53H1B.d (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of H25P06.4 Browse using GBrowse
Gene Graph
Gene Plot of Y53H1B.6 Browse using GBrowse
Gene Graph
Gene Plot of B0047.1 Browse using GBrowse
Gene Graph