RNAi Experiment: JA:Y54E10B_152.d |
Ace View of JA:Y54E10B_152.d
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Genes Inhibited |
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Gene Inhibited |
Y54E10BL.2 (col-48) |
Description of "Y54E10BL.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (I:3010040..3011638)
Transcript overlap: 888 nt |
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Sliding Window |
Raw score: 825
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.241 |
Wormbase (BLAST) |
RNAi primary |
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External "Y54E10BL.2" Links |
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Gene Inhibited |
H06A10.2 (col-185) |
Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
Evidence for Inhibition |
Sliding Window |
Raw score: 196
Relative score: 0.238 (Best raw score= for Gene )
Specificity index: 0.057 |
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External "H06A10.2" Links |
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Gene Inhibited |
F56B3.1 (col-103) |
Description of "F56B3.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
Sliding Window |
Raw score: 278
Relative score: 0.337 (Best raw score= for Gene )
Specificity index: 0.081 |
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External "F56B3.1" Links |
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Gene Inhibited |
T13B5.4 (col-40) |
Description of "T13B5.4" |
col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 122
Relative score: 0.148 (Best raw score= for Gene )
Specificity index: 0.036 |
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External "T13B5.4" Links |
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Gene Inhibited |
EGAP7.1 (dpy-3) |
Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 378
Relative score: 0.458 (Best raw score= for Gene )
Specificity index: 0.11 |
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External "EGAP7.1" Links |
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Gene Inhibited |
F23H12.4 (sqt-3) |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
Sliding Window |
Raw score: 128
Relative score: 0.155 (Best raw score= for Gene )
Specificity index: 0.037 |
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External "F23H12.4" Links |
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Gene Inhibited |
T28F2.6 (col-50) |
Description of "T28F2.6" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 292
Relative score: 0.354 (Best raw score= for Gene )
Specificity index: 0.085 |
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External "T28F2.6" Links |
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Gene Inhibited |
T21B4.2 (col-85) |
Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
Sliding Window |
Raw score: 113
Relative score: 0.137 (Best raw score= for Gene )
Specificity index: 0.033 |
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External "T21B4.2" Links |
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Gene Inhibited |
F54B11.2 (col-44) |
Description of "F54B11.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 242
Relative score: 0.293 (Best raw score= for Gene )
Specificity index: 0.071 |
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External "F54B11.2" Links |
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Gene Inhibited |
C09G5.5 (col-80) |
Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 198
Relative score: 0.24 (Best raw score= for Gene )
Specificity index: 0.058 |
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External "C09G5.5" Links |
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Gene Inhibited |
F01G12.5 (let-2) |
Description of "F01G12.5" |
let-2 encodes an alpha-2 type IV collagen, probably most closely equivalent to the human gene COL4A2 (OMIM:120090) on the basis of biological function; LET-2 is required for embryonic development and is a component of the basement membrane between muscle and hypodermis; LET-2 interacts with UNC-105, a mechanosensory ion channel of the degenerin ion channel superfamily that is expressed in muscle and required for normal growth, muscle contraction, and muscle organization. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 581
Relative score: 0.682 (Best raw score= for Gene )
Specificity index: 0.164 |
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External "F01G12.5" Links |
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Gene Inhibited |
T28F2.8 (col-51) |
Description of "T28F2.8" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 91
Relative score: 0.11 (Best raw score= for Gene )
Specificity index: 0.027 |
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External "T28F2.8" Links |
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JA:Y54E10B_152.d Phenotypes |
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Phenotype |
WT
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JA:Y54E10B_152.d Experiment Details |
Ace View |
Laboratory |
JA |
RNAi Reagent & Type |
sjj_Y54E10B_152.d (PCR_reagent) |
Reference |
Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...." |
Date |
2000-11-16 |
Gene Plot of F56B3.1 |
Browse using GBrowse
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Gene Plot of H06A10.2 |
Browse using GBrowse
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Gene Plot of T13B5.4 |
Browse using GBrowse
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Gene Plot of Y54E10BL.2 |
Browse using GBrowse
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Gene Plot of EGAP7.1 |
Browse using GBrowse
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Gene Plot of F23H12.4 |
Browse using GBrowse
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Gene Plot of T28F2.6 |
Browse using GBrowse
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Gene Plot of T21B4.2 |
Browse using GBrowse
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Gene Plot of F54B11.2 |
Browse using GBrowse
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Gene Plot of F01G12.5 |
Browse using GBrowse
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Gene Plot of C09G5.5 |
Browse using GBrowse
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Gene Plot of T28F2.8 |
Browse using GBrowse
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