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ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y47D3A.5Link to Y75B8A.1Link to M01D7.2geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:Y61A9LA_72.a Ace View of JA:Y61A9LA_72.a
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y61A9LA.8
Description of "Y61A9LA.8"  Associated GO Term : nucleic acid binding
KOG Annotation  Nuclear polyadenylated RNA binding protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:4565947..4568309)
Transcript overlap: 1070 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 986
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.563
Wormbase (BLAST) RNAi primary
External "Y61A9LA.8" Links  Wormbase NCBI
Gene Inhibited  Y75B8A.2 (nob-1)
Description of "Y75B8A.2"  The nob-1 gene encodes one of three C. elegans posterior group homeodomain transcription factors orthologous to Drosophila Abd-B and the vertebrate Hox9-13 proteins; NOB-1, along with an additional posterior Hox ortholog, PHP-3, is required during embryogenesis for proper fate specification and morphogenesis of cells in the posterior region.
KOG Annotation  Transcription factor Abd-B, contains HOX domain
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 67
Relative score: 0.068 (Best raw score= for Gene )
Specificity index: 0.038
External "Y75B8A.2" Links  Wormbase NCBI
Gene Inhibited  Y67H2A.9
Evidence for Inhibition 
Sliding Window Raw score: 551
Relative score: 0.559 (Best raw score= for Gene )
Specificity index: 0.314
External "Y67H2A.9" Links  Wormbase NCBI
Gene Inhibited  F47H4.3 (srz-46)
Evidence for Inhibition 
Sliding Window Raw score: 148
Relative score: 0.15 (Best raw score= for Gene )
Specificity index: 0.084
External "F47H4.3" Links  Wormbase NCBI
JA:Y61A9LA_72.a Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y61A9LA_72.a Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y61A9LA_72.a (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y75B8A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y61A9LA.8 Browse using GBrowse
Gene Graph
Gene Plot of Y67H2A.9 Browse using GBrowse
Gene Graph
Gene Plot of F47H4.3 Browse using GBrowse
Gene Graph