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RNAi Experiment: JA:Y63D3A.9 Ace View of JA:Y63D3A.9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y63D3A.9
Description of "Y63D3A.9"  This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:14083163..14084204)
Transcript overlap: 703 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 619
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.755
Wormbase (BLAST) RNAi primary
External "Y63D3A.9" Links  Wormbase NCBI
Gene Inhibited  Y63D3A.11
Evidence for Inhibition 
Sliding Window Raw score: 141
Relative score: 0.228 (Best raw score= for Gene )
Specificity index: 0.172
Wormbase (BLAST) RNAi primary
External "Y63D3A.11" Links  Wormbase NCBI
Gene Inhibited  F43G9.9 (cpn-1)
Description of "F43G9.9"  cpn-1 encodes a calponin homolog, more closely related to calponin per se than to its paralogs transgelin (SM22 alpha) or neuronal protein NP25, that is is dispensable for viability and gross morphology in mass RNAi screens, and that has no obvious mutant phenotype in a rearrangement that probably disrupts cpn-1.
KOG Annotation  Calponin
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 60
Relative score: 0.097 (Best raw score= for Gene )
Specificity index: 0.073
External "F43G9.9" Links  Wormbase NCBI
JA:Y63D3A.9 Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y63D3A.9 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y63D3A.9 (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of Y63D3A.11 Browse using GBrowse
Gene Graph
Gene Plot of F43G9.9 Browse using GBrowse
Gene Graph
Gene Plot of Y63D3A.9 Browse using GBrowse
Gene Graph