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RNAi Experiment: JA:Y71F9A_279.b Ace View of JA:Y71F9A_279.b
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y71F9AM.5 (nxt-1)
Description of "Y71F9AM.5"  Associated GO Term : protein transporter activity
KOG Annotation  RNA export factor NXT1
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:2929711..2930417)
Transcript overlap: 437 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 355
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.524
Wormbase (BLAST) RNAi primary
External "Y71F9AM.5" Links  Wormbase NCBI
Gene Inhibited  Y71F9AM.6
KOG Annotation  Translocon-associated complex TRAP, alpha subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (I:2929711..2930417)
Transcript overlap: 360 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 278
Relative score: 0.908 (Best raw score= for Gene )
Specificity index: 0.476
External "Y71F9AM.6" Links  Wormbase NCBI
JA:Y71F9A_279.b Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Adult  Pvl
Unc
Phenotype  Oth 200-500 cells
Movies/Stacks/Images  /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif Help
JA:Y71F9A_279.b Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y71F9A_279.b (PCR_reagent)
Remark  multiple female pronuclei
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of Y71F9AM.6 Browse using GBrowse
Gene Graph
Gene Plot of Y71F9AM.5 Browse using GBrowse
Gene Graph