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RNAi Experiment: JA:Y71F9A_294.c Ace View of JA:Y71F9A_294.c
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y71F9AL.13 (rpl-1)
Description of "Y71F9AL.13"  rpl-1 encodes a large ribosomal subunit L10a protein; by homology, RPL-1 is predicted to function in protein biosynthesis; in C. elegans, RPL-1 activity is essential for embryonic development.
KOG Annotation  60S ribosomal protein L10A
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:2875202..2876020)
Transcript overlap: 531 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 433
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "Y71F9AL.13" Links  Wormbase NCBI
Gene Inhibited  Y71F9AL.12
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:2875202..2876020)
Transcript overlap: 87 nt		 Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "Y71F9AL.12" Links  Wormbase NCBI
JA:Y71F9A_294.c Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 20 - 40 %
JA:Y71F9A_294.c Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y71F9A_294.c (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of Y71F9AL.12 Browse using GBrowse
Gene Graph
Gene Plot of Y71F9AL.13 Browse using GBrowse
Gene Graph