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RNAi Experiment: JA:Y71F9B_297.a Ace View of JA:Y71F9B_297.a
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y71F9B.9
Description of "Y71F9B.9"  Associated GO Term : oxidoreductase activity
KOG Annotation  3-hydroxyacyl-CoA dehydrogenase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:2759079..2761545)
Transcript overlap: 944 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 818
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.728
Wormbase (BLAST) RNAi primary
External "Y71F9B.9" Links  Wormbase NCBI
Gene Inhibited  Y71F9B.10 (sop-3)
Description of "Y71F9B.10"  The sop-3 gene encodes a novel protein that regulates Hox gene expression by modulating Wnt signaling.
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:2759079..2761545)
Transcript overlap: 342 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 306
Relative score: 0.374 (Best raw score= for Gene )
Specificity index: 0.272
Wormbase (BLAST) RNAi primary
External "Y71F9B.10" Links  Wormbase NCBI
JA:Y71F9B_297.a Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y71F9B_297.a Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y71F9B_297.a (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of Y71F9B.9 Browse using GBrowse
Gene Graph
Gene Plot of Y71F9B.10 Browse using GBrowse
Gene Graph