Link to Y71G12B.32Link to Y71G12B.2RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y71G12B.30RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y75B8A.2bLink to Y75B8A.2aRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y20F4.2Link to M01D7.7bLink to K03D7.3Link to Y39G10AR.18aLink to F52C6.7Link to Y34D9A.10Link to Y34D9A.2geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: JA:Y71G12A_202.c Ace View of JA:Y71G12A_202.c
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y71G12B.2
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:1817010..1819055)
Transcript overlap: 665 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 602
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.591
Wormbase (BLAST) RNAi primary
External "Y71G12B.2" Links  Wormbase NCBI
Gene Inhibited  Y71G12B.30
Description of "Y71G12B.30"  Associated GO Term : hydrolase activity
Evidence for Inhibition 
ePCR Transcript overlap: 66 nt Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "Y71G12B.30" Links  Wormbase NCBI
Gene Inhibited  Y75B8A.2 (nob-1)
Description of "Y75B8A.2"  The nob-1 gene encodes one of three C. elegans posterior group homeodomain transcription factors orthologous to Drosophila Abd-B and the vertebrate Hox9-13 proteins; NOB-1, along with an additional posterior Hox ortholog, PHP-3, is required during embryogenesis for proper fate specification and morphogenesis of cells in the posterior region.
KOG Annotation  Transcription factor Abd-B, contains HOX domain
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 61
Relative score: 0.101 (Best raw score= for Gene )
Specificity index: 0.06
External "Y75B8A.2" Links  Wormbase NCBI
Gene Inhibited  Y51F10.5
Description of "Y51F10.5"  Associated GO Term : beta-N-acetylhexosaminidase activity
Evidence for Inhibition 
Sliding Window Raw score: 71
Relative score: 0.118 (Best raw score= for Gene )
Specificity index: 0.07
External "Y51F10.5" Links  Wormbase NCBI
Gene Inhibited  Y34D9A.2
Description of "Y34D9A.2"  Associated GO Term : rhodopsin-like receptor activity
Evidence for Inhibition 
Sliding Window Raw score: 104
Relative score: 0.173 (Best raw score= for Gene )
Specificity index: 0.102
External "Y34D9A.2" Links  Wormbase NCBI
Gene Inhibited  Y39G10AR.18
Description of "Y39G10AR.18"  Associated GO Term : S-adenosylmethionine-dependent methyltransferase activity
KOG Annotation  Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1)
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 108
Relative score: 0.179 (Best raw score= for Gene )
Specificity index: 0.106
External "Y39G10AR.18" Links  Wormbase NCBI
Gene Inhibited  Y67H2A.9
Evidence for Inhibition 
Sliding Window Raw score: 73
Relative score: 0.121 (Best raw score= for Gene )
Specificity index: 0.072
External "Y67H2A.9" Links  Wormbase NCBI
JA:Y71G12A_202.c Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y71G12A_202.c Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y71G12A_202.c (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of Y75B8A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y71G12B.30 Browse using GBrowse
Gene Graph
Gene Plot of Y51F10.5 Browse using GBrowse
Gene Graph
Gene Plot of Y39G10AR.18 Browse using GBrowse
Gene Graph
Gene Plot of Y34D9A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y67H2A.9 Browse using GBrowse
Gene Graph
Gene Plot of Y71G12B.2 Browse using GBrowse
Gene Graph