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RNAi Experiment: JA:Y77E11A_3443.b Ace View of JA:Y77E11A_3443.b
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y77E11A.4 (jtr-1)
Description of "Y77E11A.4"  jtr-1 encodes a predicted transmembrane protein that is related to the conserved jumping translocation breakpoint (JTB) family of proteins (OMIM:604671, the human JTB gene is found fused to telomeric repeats in a case of jumping translocation leading to leukemia); as loss of jtr-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of JTR-1 in C. elegans development and/or behavior is not yet known.
KOG Annotation  Transmembrane protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:1420974..1422782)
Transcript overlap: 635 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 572
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.797
Wormbase (BLAST) RNAi primary
External "Y77E11A.4" Links  Wormbase NCBI
Gene Inhibited  Y23H5B.7
Evidence for Inhibition 
Sliding Window Raw score: 146
Relative score: 0.255 (Best raw score= for Gene )
Specificity index: 0.203
External "Y23H5B.7" Links  Wormbase NCBI
JA:Y77E11A_3443.b Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y77E11A_3443.b Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y77E11A_3443.b (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of Y77E11A.4 Browse using GBrowse
Gene Graph
Gene Plot of Y23H5B.7 Browse using GBrowse
Gene Graph