Link to Y87G2A.13.1Link to Y87G2A.13.2RNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y87G2A.11Link to Y87G2A.12RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y67D8A.2a.2Link to Y67D8A.2a.1Link to Y67D8A.1.2Link to Y67D8A.1.1RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: JA:Y87G2A.v Ace View of JA:Y87G2A.v
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y87G2A.13
KOG Annotation  Predicted membrane protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:13597889..13599732)
Transcript overlap: 701 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 660
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.501
Wormbase (BLAST) RNAi primary
External "Y87G2A.13" Links  Wormbase NCBI
Gene Inhibited  Y87G2A.11
KOG Annotation  WD repeat protein TSSC1, WD repeat superfamily
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:13597889..13599732)
Transcript overlap: 256 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 214
Relative score: 0.764 (Best raw score= for Gene )
Specificity index: 0.383
Wormbase (BLAST) RNAi primary
External "Y87G2A.11" Links  Wormbase NCBI
Gene Inhibited  Y67D8A.1
Description of "Y67D8A.1"  Y67D8A.1 is orthologous to the human gene PHOSPHORYLASE KINASE, BETA SUBUNIT (PHKB; OMIM:172490), which when mutated leads to glycogen storage disease.
KOG Annotation  Phosphorylase kinase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 65
Relative score: 0.232 (Best raw score= for Gene )
Specificity index: 0.116
External "Y67D8A.1" Links  Wormbase NCBI
JA:Y87G2A.v Phenotypes Help with Phenotypes
Phenotype  WT
JA:Y87G2A.v Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_Y87G2A.v (PCR_reagent)
Reference  Fraser AG et al. (2000) Nature "Functional genomic analysis of C. elegans chromosome I by systematic RNA ...."
Date  2000-11-16
Gene Plot of Y87G2A.13 Browse using GBrowse
Gene Graph
Gene Plot of Y67D8A.1 Browse using GBrowse
Gene Graph
Gene Plot of Y87G2A.11 Browse using GBrowse
Gene Graph