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RNAi Experiment: JA:ZK1193.1 Ace View of JA:ZK1193.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  ZK1193.1 (col-19)
Description of "ZK1193.1"  col-19 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) that is required for normal structure of the alae; expressed during the L2-to-dauer and L4-to-adult molts with strongest expression in adult animals.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (X:421482..422639)
Transcript overlap: 877 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 814
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.627
Wormbase (BLAST) RNAi primary
External "ZK1193.1" Links  Wormbase NCBI
Gene Inhibited  C09G5.4 (col-39)
Description of "C09G5.4"  col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 484
Relative score: 0.595 (Best raw score= for Gene )
Specificity index: 0.373
External "C09G5.4" Links  Wormbase NCBI
JA:ZK1193.1 Phenotypes Help with Phenotypes
Phenotype  WT
JA:ZK1193.1 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_ZK1193.1 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of ZK1193.1 Browse using GBrowse
Gene Graph
Gene Plot of C09G5.4 Browse using GBrowse
Gene Graph