Link to F33H12.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to ZK250.9Link to F59H6.5Link to Y46B2A.2Link to ZK250.10Link to Y16E11A.2geneMap Link to F59H6.5RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y53F4B.7Link to ZK250.9Link to Y16E11A.2Link to Y53F4B.26Link to F33H12.6Link to Y46B2A.2Link to ZK250.10geneMap Link to Y16E11A.2RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F33H12.6Link to F59H6.5Link to ZK250.9Link to Y46B2A.2Link to ZK250.10Link to Y53F4B.7Link to Y53F4B.26geneMap Link to Y46B2A.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F33H12.6Link to F59H6.5Link to ZK250.9Link to Y16E11A.2Link to ZK250.10Link to Y53F4B.7Link to Y53F4B.26geneMap Link to ZK250.9RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F33H12.6Link to F59H6.5Link to Y46B2A.2Link to Y16E11A.2Link to ZK250.10Link to Y53F4B.7Link to Y53F4B.26geneMap RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F33H12.6Link to ZK250.9Link to F59H6.5Link to Y46B2A.2Link to Y16E11A.2geneMap
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RNAi Experiment: JA:ZK250.9 Ace View of JA:ZK250.9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F33H12.6
KOG Annotation  DNA helicase PIF1/RRM3
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (II:2596034..2597233)
Transcript overlap: 1090 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1027
Relative score: 0.979 (Best raw score= for Gene )
Specificity index: 0.173
Wormbase (BLAST) RNAi primary
External "F33H12.6" Links  Wormbase NCBI
Gene Inhibited  F59H6.5
KOG Annotation  DNA helicase PIF1/RRM3
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (II:2005071..2006270)
Transcript overlap: 1150 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 998
Relative score: 0.951 (Best raw score= for Gene )
Specificity index: 0.168
Wormbase (BLAST) RNAi primary
External "F59H6.5" Links  Wormbase NCBI
Gene Inhibited  Y16E11A.2
KOG Annotation  DNA helicase PIF1/RRM3
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (II:1981227..1982426)
Transcript overlap: 1090 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 939
Specificity index: 0.158
Wormbase (BLAST) RNAi primary
External "Y16E11A.2" Links  Wormbase NCBI
Gene Inhibited  Y46B2A.2
KOG Annotation  DNA helicase PIF1/RRM3
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (II:853642..854841)
Transcript overlap: 1150 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 992
Relative score: 0.946 (Best raw score= for Gene )
Specificity index: 0.167
Wormbase (BLAST) RNAi primary
External "Y46B2A.2" Links  Wormbase NCBI
Gene Inhibited  ZK250.9
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (II:1965045..1966244)
Transcript overlap: 1090 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 939
Relative score: 0.895 (Best raw score= for Gene )
Specificity index: 0.158
External "ZK250.9" Links  Wormbase NCBI
Gene Inhibited  ZK250.10
Evidence for Inhibition 
Sliding Window Raw score: 1049
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.176
External "ZK250.10" Links  Wormbase NCBI
JA:ZK250.9 Phenotypes Help with Phenotypes
Phenotype  WT
JA:ZK250.9 Experiment Details Ace View
Laboratory  JA
RNAi Reagent & Type  sjj_ZK250.9 (PCR_reagent)
Reference  Kamath RS et al. (2003) Nature "Systemic functional analysis of the Caenorhabditis elegans genome using ...."
Date  2003-1-10
Gene Plot of ZK250.10 Browse using GBrowse
Gene Graph
Gene Plot of F59H6.5 Browse using GBrowse
Gene Graph
Gene Plot of F33H12.6 Browse using GBrowse
Gene Graph
Gene Plot of Y46B2A.2 Browse using GBrowse
Gene Graph
Gene Plot of Y16E11A.2 Browse using GBrowse
Gene Graph
Gene Plot of ZK250.9 Browse using GBrowse
Gene Graph