| RNAi Experiment: MV_SV:mv_AAA27985 |
Ace View of MV_SV:mv_AAA27985
|
| Genes Inhibited |
 |
| Gene Inhibited |
F36A4.10 (col-34) |
| Description of "F36A4.10" |
col-34 encodes a cuticle collagen protein and is a critical component of male tail cuticle organization affecting ray morphology. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 813
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.343 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F36A4.10" Links |
  |
| Gene Inhibited |
D2024.8 (col-114) |
| Description of "D2024.8" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 135
Relative score: 0.166 (Best raw score= for Gene )
Specificity index: 0.057 |
|
| External "D2024.8" Links |
|
| Gene Inhibited |
T13B5.4 (col-40) |
| Description of "T13B5.4" |
col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 82
Relative score: 0.101 (Best raw score= for Gene )
Specificity index: 0.035 |
|
| External "T13B5.4" Links |
|
| Gene Inhibited |
Y54E10BL.2 (col-48) |
| Description of "Y54E10BL.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 287
Relative score: 0.353 (Best raw score= for Gene )
Specificity index: 0.121 |
|
| External "Y54E10BL.2" Links |
|
| Gene Inhibited |
ZC513.8 (col-43) |
| Description of "ZC513.8" |
col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 79
Relative score: 0.097 (Best raw score= for Gene )
Specificity index: 0.033 |
|
| External "ZC513.8" Links |
|
| Gene Inhibited |
Y38C1BA.3 (col-109) |
| Description of "Y38C1BA.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 395
Relative score: 0.486 (Best raw score= for Gene )
Specificity index: 0.167 |
|
| External "Y38C1BA.3" Links |
|
| Gene Inhibited |
F11G11.12 (col-73) |
| Description of "F11G11.12" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 250
Specificity index: 0.106 |
|
| External "F11G11.12" Links |
|
| Gene Inhibited |
F11G11.10 (col-17) |
| Description of "F11G11.10" |
col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle). |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 250
Relative score: 0.308 (Best raw score= for Gene )
Specificity index: 0.106 |
|
| External "F11G11.10" Links |
|
| Gene Inhibited |
T28F2.8 (col-51) |
| Description of "T28F2.8" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 76
Relative score: 0.093 (Best raw score= for Gene )
Specificity index: 0.032 |
|
| External "T28F2.8" Links |
|
| MV_SV:mv_AAA27985 Phenotypes |
|
|
| Phenotype |
WTRNAi did not cause viable post-embryonic phenotype
|
| MV_SV:mv_AAA27985 Experiment Details |
Ace View |
| Laboratory |
MV |
| RNAi Reagent & Type |
mv_AAA27985 (ORFeome_reagent) |
| Remark |
bacterial-feeding RNAi began at the L1 larval stage |
| Reference |
Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...." |
| Delivery Method |
Bacterial_feeding |
| Date |
2004-9-01 |
| Gene Plot of D2024.8 |
Browse using GBrowse
|
 |
| Gene Plot of F36A4.10 |
Browse using GBrowse
|
 |
| Gene Plot of Y54E10BL.2 |
Browse using GBrowse
|
 |
| Gene Plot of T13B5.4 |
Browse using GBrowse
|
 |
| Gene Plot of ZC513.8 |
Browse using GBrowse
|
 |
| Gene Plot of Y38C1BA.3 |
Browse using GBrowse
|
 |
| Gene Plot of F11G11.12 |
Browse using GBrowse
|
 |
| Gene Plot of F11G11.10 |
Browse using GBrowse
|
 |
| Gene Plot of T28F2.8 |
Browse using GBrowse
|
 |
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