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ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: MV_SV:mv_AAA27990 Ace View of MV_SV:mv_AAA27990
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F57B1.4 (col-160)
Description of "F57B1.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 258
Relative score: 0.307 (Best raw score= for Gene )
Specificity index: 0.157
External "F57B1.4" Links  Wormbase NCBI
Gene Inhibited  W01B6.7 (col-2)
Description of "W01B6.7"  col-2 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expression peaks during the molt that separates the L2 larval and dauer stages as the dauer cuticle is being formed, and mRNA is expressed at low levels in post-dauer L4 larvae and in adult animals.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 840
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.512
Wormbase (BLAST) RNAi primary
External "W01B6.7" Links  Wormbase NCBI
Gene Inhibited  C24F3.6 (col-124)
Description of "C24F3.6"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 117
Relative score: 0.139 (Best raw score= for Gene )
Specificity index: 0.071
External "C24F3.6" Links  Wormbase NCBI
Gene Inhibited  C09G5.4 (col-39)
Description of "C09G5.4"  col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 426
Relative score: 0.507 (Best raw score= for Gene )
Specificity index: 0.26
External "C09G5.4" Links  Wormbase NCBI
MV_SV:mv_AAA27990 Phenotypes Help with Phenotypes
Phenotype  WTRNAi did not cause viable post-embryonic phenotype
MV_SV:mv_AAA27990 Experiment Details Ace View
Laboratory  MV
RNAi Reagent & Type  mv_AAA27990 (ORFeome_reagent)
Remark  bacterial-feeding RNAi began at the L1 larval stage
Reference  Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...."
Delivery Method  Bacterial_feeding
Date  2004-9-01
Gene Plot of W01B6.7 Browse using GBrowse
Gene Graph
Gene Plot of F57B1.4 Browse using GBrowse
Gene Graph
Gene Plot of C09G5.4 Browse using GBrowse
Gene Graph
Gene Plot of C24F3.6 Browse using GBrowse
Gene Graph