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RNAi Experiment: MV_SV:mv_AAC26982 Ace View of MV_SV:mv_AAC26982
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y82E9BR.2
Description of "Y82E9BR.2"  Associated GO Term : nucleotide binding
KOG Annotation  Splicing factor U2AF, large subunit (RRM superfamily)
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 99
Relative score: 0.114 (Best raw score= for Gene )
Specificity index: 0.102
Wormbase (BLAST) RNAi primary
External "Y82E9BR.2" Links  Wormbase NCBI
Gene Inhibited  Y92C3B.2 (uaf-1)
Description of "Y92C3B.2"  uaf-1 encodes the large subunit of U2AF, the U2 small nuclear ribonucleoparticle (snRNP) auxiliary factor and is a homolog of mammalian and fly U2AF65; UAF-1 has been shown to bind RNA and this binding is enhanced by UAF-2; the abundance of one alternative transcript appears to be increased during starvation and this transcript is retained in the nucleus; uaf-1 affects embryonic viability, based on RNAi analysis.
KOG Annotation  Splicing factor U2AF, large subunit (RRM superfamily)
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 1089
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.898
Wormbase (BLAST) RNAi primary
External "Y92C3B.2" Links  Wormbase NCBI
MV_SV:mv_AAC26982 Phenotypes Help with Phenotypes
Larval  Let penetrance is less than 90%
Lvl penetrance is less than 90%
Adult  Pvl penetrance is less than 90%
Ste
Phenotype  Unclassified slim morphology
MV_SV:mv_AAC26982 Experiment Details Ace View
Laboratory  MV
RNAi Reagent & Type  mv_AAC26982 (ORFeome_reagent)
Remark  bacterial-feeding RNAi began at the L1 larval stage
Reference  Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...."
Delivery Method  Bacterial_feeding
Date  2004-9-01
Gene Plot of Y92C3B.2 Browse using GBrowse
Gene Graph
Gene Plot of Y82E9BR.2 Browse using GBrowse
Gene Graph