| RNAi Experiment: MV_SV:mv_B0035.10 |
Ace View of MV_SV:mv_B0035.10
|
| Genes Inhibited |
 |
| Gene Inhibited |
F54E12.1 (his-55) |
| Description of "F54E12.1" |
his-55 encodes an H3 histone; by homology, HIS-55 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-55 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 366
Relative score: 0.946 (Best raw score= for Gene )
Specificity index: 0.247 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F54E12.1" Links |
  |
| Gene Inhibited |
F22B3.2 (his-63) |
| Description of "F22B3.2" |
his-63 encodes an H3 histone; by homology, HIS-63 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-63 is a replication-dependent histone locus. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 332
Relative score: 0.858 (Best raw score= for Gene )
Specificity index: 0.224 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F22B3.2" Links |
|
| Gene Inhibited |
B0035.10 (his-45) |
| Description of "B0035.10" |
his-45 encodes an H3 histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 387
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.262 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "B0035.10" Links |
|
| Gene Inhibited |
F17E9.10 (his-32) |
| Description of "F17E9.10" |
his-32 encodes an H3 histone; by homology, HIS-32 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-32 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 71
Relative score: 0.183 (Best raw score= for Gene )
Specificity index: 0.048 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F17E9.10" Links |
|
| Gene Inhibited |
F08G2.3 (his-42) |
| Description of "F08G2.3" |
his-42 encodes an H3 histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 74
Relative score: 0.191 (Best raw score= for Gene )
Specificity index: 0.05 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F08G2.3" Links |
|
| Gene Inhibited |
T10C6.13 (his-2) |
| Description of "T10C6.13" |
his-2 encodes an H3 histone; his-2 is contained within the histone gene cluster HIS1. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 59 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "T10C6.13" Links |
|
| Gene Inhibited |
F55G1.2 (his-59) |
| Description of "F55G1.2" |
his-59 encodes an H3 histone; by homology, HIS-59 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-59 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
| KOG Annotation |
Histones H3 and H4
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 111
Relative score: 0.287 (Best raw score= for Gene )
Specificity index: 0.075 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F55G1.2" Links |
|
| Gene Inhibited |
W09H1.2 (his-73) |
| Description of "W09H1.2" |
his-73 encodes an H3 histone; by homology, HIS-73 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-73 is a replication-dependent histone locus. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 138
Relative score: 0.357 (Best raw score= for Gene )
Specificity index: 0.093 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "W09H1.2" Links |
|
| MV_SV:mv_B0035.10 Phenotypes |
|
|
| Embryonic |
Emb Penetrance None reported |
| Phenotype |
Unclassified
reduced brood size
|
| MV_SV:mv_B0035.10 Experiment Details |
Ace View |
| Laboratory |
MV |
| RNAi Reagent & Type |
mv_B0035.10 (ORFeome_reagent) |
| Remark |
bacterial-feeding RNAi began at the L1 larval stage |
| Reference |
Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...." |
| Delivery Method |
Bacterial_feeding |
| Date |
2004-9-01 |
| Gene Plot of F22B3.2 |
Browse using GBrowse
|
 |
| Gene Plot of F54E12.1 |
Browse using GBrowse
|
 |
| Gene Plot of T10C6.13 |
Browse using GBrowse
|
 |
| Gene Plot of F08G2.3 |
Browse using GBrowse
|
 |
| Gene Plot of B0035.10 |
Browse using GBrowse
|
 |
| Gene Plot of F55G1.2 |
Browse using GBrowse
|
 |
| Gene Plot of F17E9.10 |
Browse using GBrowse
|
 |
| Gene Plot of W09H1.2 |
Browse using GBrowse
|
 |
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