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RNAi Experiment: MV_SV:mv_C34H4.4 Ace View of MV_SV:mv_C34H4.4
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C50B6.4 (col-161)
Description of "C50B6.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 68
Relative score: 0.106 (Best raw score= for Gene )
Specificity index: 0.065
External "C50B6.4" Links  Wormbase NCBI
Gene Inhibited  Y2H9A.3 (col-162)
Description of "Y2H9A.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 95
Relative score: 0.148 (Best raw score= for Gene )
Specificity index: 0.09
External "Y2H9A.3" Links  Wormbase NCBI
Gene Inhibited  C34H4.4 (col-107)
Description of "C34H4.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 798
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.61
Wormbase (BLAST) RNAi primary
External "C34H4.4" Links  Wormbase NCBI
Gene Inhibited  F08G5.4 (col-130)
Description of "F08G5.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 247
Relative score: 0.385 (Best raw score= for Gene )
Specificity index: 0.235
External "F08G5.4" Links  Wormbase NCBI
MV_SV:mv_C34H4.4 Phenotypes Help with Phenotypes
Phenotype  WTRNAi did not cause viable post-embryonic phenotype
MV_SV:mv_C34H4.4 Experiment Details Ace View
Laboratory  MV
RNAi Reagent & Type  mv_C34H4.4 (ORFeome_reagent)
Remark  bacterial-feeding RNAi began at the L1 larval stage
Reference  Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...."
Delivery Method  Bacterial_feeding
Date  2004-9-01
Gene Plot of C50B6.4 Browse using GBrowse
Gene Graph
Gene Plot of Y2H9A.3 Browse using GBrowse
Gene Graph
Gene Plot of C34H4.4 Browse using GBrowse
Gene Graph
Gene Plot of F08G5.4 Browse using GBrowse
Gene Graph